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Saccharomyces Genome Database

Abbreviation:SGD

Recommended

General Information

The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast Saccharomyces cerevisiae along with search and analysis tools to explore these data, enabling the discovery of functional relationships between sequence and gene products in fungi and higher organisms.

Homepage http://www.yeastgenome.org/

Countries that developed this resource United States

Created in 1993

Taxonomic range

Saccharomyces

Saccharomyces cerevisiae

Knowledge Domains

Subjects

User-defined Tags

Chromosomal element nomenclature

Literature annotations defined by experimental results

Synthetic genetic array

In the following recommendations:

How to cite this record FAIRsharing.org: SGD; Saccharomyces Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.pzvw40; Last edited: Feb. 23, 2021, 3:53 p.m.; Last accessed: Oct 27 2021 2:39 p.m.

This record is maintained by stacia ORCID

Record updated: Feb. 23, 2021, 2:06 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.pzvw40' by 'The FAIRsharing Team' at 14:06, 23 Feb 2021 (approved):

	'licences' has been modified:
		Before:
			Stanford University Terms of Use|https://www.stanford.edu/site/terms/|Data
		After:
			Stanford University Terms of Use|https://www.stanford.edu/site/terms/|Data
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Added:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Removed:

	'description' has been modified:
		Before: The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. SGD contains a variety of biological information and tools with which to search and analyze it.
		After: The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast Saccharomyces cerevisiae along with search and analysis tools to explore these data, enabling the discovery of functional relationships between sequence and gene products in fungi and higher organisms.

	'publications' has been modified:
		Before:
			Standardized description of scientific evidence using the Evidence Ontology (ECO).|Chibucos MC., Mungall CJ., Balakrishnan R., Christie KR., Huntley RP., White O., Blake JA., Lewis SE., Giglio M.|Database (Oxford).|2014
			Saccharomyces Genome Database provides new regulation data.|Costanzo MC., Engel SR., Wong ED., Lloyd P., Karra K., Chan ET., Weng S., Paskov KM., Roe GR., Binkley G., Hitz BC., Cherry JM.|Nucleic Acids Res.|2014
			The reference genome sequence of Saccharomyces cerevisiae: then and now.|Engel SR., Dietrich FS., Fisk DG., Binkley G., Balakrishnan R., Costanzo MC., Dwight SS., Hitz BC., Karra K., Nash RS., Weng S., Wong ED., Lloyd P., Skrzypek MS., Miyasato SR., Simison M., Cherry JM.|G3 (Bethesda).|2014
			A guide to best practices for Gene Ontology (GO) manual annotation.|Balakrishnan R., Harris MA., Huntley R., Van Auken K., Cherry JM.|Database (Oxford).|2013
			The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database.|Engel SR., Cherry JM.|Database (Oxford).|2013
			The YeastGenome app: the Saccharomyces Genome Database at your fingertips.|Wong ED., Karra K., Hitz BC., Hong EL., Cherry JM.|Database (Oxford).|2013
			 YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit.|Balakrishnan R., Park J., Karra K., Hitz BC., Binkley G., Hong EL., Sullivan J., Micklem G., Cherry JM.|Database (Oxford).|2012
			Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.|Chan ET., Cherry JM.|Database (Oxford).|2012
			CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.|Park J., Costanzo MC., Balakrishnan R., Cherry JM., Hong EL.|Database (Oxford).|2012
			Saccharomyces Genome Database: the genomics resource of budding yeast.|Cherry JM., Hong EL., Amundsen C., Balakrishnan R., Binkley G., Chan ET., Christie KR., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hitz BC., Karra K., Krieger CJ., Miyasato SR., Nash RS., Park J., Skrzypek MS., Simison M., Weng S., Wong ED.|Nucleic Acids Res.|2012
			Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. |Costanzo MC., Park J., Balakrishnan R., Cherry JM., Hong EL.|Database (Oxford).|2011
			Saccharomyces Genome Database provides mutant phenotype data.|Engel SR., Balakrishnan R., Binkley G., Christie KR., Costanzo MC., Dwight SS., Fisk DG., Hirschman JE., Hitz BC., Hong EL., Krieger CJ., Livstone MS., Miyasato SR., Nash R., Oughtred R., Park J., Skrzypek MS., Weng S., Wong ED., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res. |2010
			Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.|Christie KR., Hong EL., Cherry JM.|Trends Microbiol.|2009
			Using Model Organism Databases (MODs).|Engel SR.|Current Protocols Essential Laboratory Techniques|2009
			New mutant phenotype data curation system in the Saccharomyces Genome Database.|Costanzo MC., Skrzypek MS., Nash R., Wong E., Binkley G, Engel SR., Hitz B., Hong EL., Cherry JM., and the Saccharomyces Genome Database Project.|Database (Oxford).|2009
			Gene Ontology annotations at SGD: new data sources and annotation methods.|Hong EL., Balakrishnan R., Dong Q., Christie KR., Park J., Binkley G., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hitz BC., Krieger CJ., Livstone MS,. Miyasato SR., Nash RS., Oughtred R., Skrzypek MS., Weng S., Wong ED., Zhu KK., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res.|2008
			Expanded protein information at SGD: new pages and proteome browser.|Nash R., Weng S., Hitz B., Balakrishnan R., Christie KR., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hong EL., Livstone MS., Oughtred R., Park J, Skrzypek M., Theesfeld CL., Binkley G., Dong Q., Lane C., Miyasato S., Sethuraman A., Schroeder M., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res.|2007
			Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.|Fisk DG., Ball CA., Dolinski K., Engel SR., Hong EL., Issel-Tarver L., Schwartz K., Sethuraman A., Botstein D., Cherry JM.|Yeast.|2006
			Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.|Hirschman JE., Balakrishnan R., Christie KR., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hong EL., Livstone MS., Nash R., Park J., Oughtred R., Skrzypek M., Starr B., Theesfeld CL., Williams J., Andrada R., Binkley G., Dong Q., Lane C., Miyasato S., Sethuraman A., Schroeder M., Thanawala MK., Weng S., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res.|2006
			Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).|Balakrishnan R., Christie KR., Costanzo MC., Dolinski K., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hong EL., Nash R., Oughtred R., Skrzypek M., Theesfeld CL., Binkley G., Dong Q., Lane C., Sethuraman A., Weng S., Botstein D., Cherry JM.|Nucleic Acids Res.|2005
			Saccharomyces genome database: underlying principles and organisation. |Dwight SS., Balakrishnan R., Christie KR., Costanzo MC., Dolinski K., Engel SR., Feierbach B., Fisk DG., Hirschman J., Hong EL., Issel-Tarver L., Nash RS., Sethuraman A., Starr B., Theesfeld CL., Andrada R., Binkley G., Dong Q., Lane C., Schroeder M., Weng S., Botstein D., Cherry JM.|Brief Bioinform.|2004
			Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.|Christie KR., Weng S., Balakrishnan R., Costanzo MC., Dolinski K., Dwight SS., Engel SR., Feierbach B., Fisk DG., Hirschman JE., Hong EL., Issel-Tarver L., Nash R., Sethuraman A., Starr B., Theesfeld CL., Andrada R., Binkley G., Dong Q., Lane C., Schroeder M., Botstein D., Cherry JM.|Nucleic Acids Res.|2004
			Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.|Weng S., Dong Q., Balakrishnan R., Christie K., Costanzo M., Dolinski K., Dwight SS., Engel S., Fisk DG., Hong E., Issel-Tarver L., Sethuraman A., Theesfeld C., Andrada R., Binkley G., Lane C., Schroeder M., Botstein D., Cherry JM.|Nucleic Acids Res.|2003
			Saccharomyces Genome Database|Issel-Tarver L., Christie KR., Dolinski K., Andrada R., Balakrishnan R., Ball CA., Binkley G., Dong S., Dwight SS., Fisk DG., Harris M., Schroeder M., Sethuraman A., Tse K., Weng S., Botstein D., Cherry JM.|Methods Enzymol.|2002
			Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).|Dwight SS., Harris MA., Dolinski K., Ball CA., Binkley G., Christie KR., Fisk DG., Issel-Tarver L., Schroeder M., Sherlock G., Sethuraman A., Weng S., Botstein D., Cherry JM.|Nucleic Acids Res.|2002
			From one to many: expanding the Saccharomyces cerevisiae reference genome panel.|Engel SR., Weng S., Binkley G., Paskov K., Song G., Cherry JM.|Database (Oxford).|2016
			 The Saccharomyces Genome Database Variant Viewer.|Sheppard TK., Hitz BC., Engel SR., Song G., Balakrishnan R., Binkley G., Costanzo MC., Dalusag KS., Demeter J., Hellerstedt ST., Karra K., Nash RS., Paskov KM., Skrzypek MS., Weng S., Wong ED., Cherry JM.| Nucleic Acids Res.|2016
			The Saccharomyces Genome Database: A Tool for Discovery.|Cherry JM.|Cold Spring Harb Protoc.|2015
			The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Expanding yeast knowledge online.|Dolinski K., Ball CA., Chervitz SA., Dwight SS., Harris MA., Roberts S., Roe T., Cherry JM., Botstein D.|Yeast.|1998
			The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant Phenotypes.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Biocuration at the Saccharomyces Genome Database.|Skrzypek MS., Nash RS.|Genesis.|2015
			AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae.|Song G., Dickins BJ., Demeter J., Engel S., Dunn B., Cherry JM.|PLoS One.|2015
			The complex portal - an encyclopaedia of macromolecular complexes.|Meldal BH., Forner-Martinez O., Costanzo MC., Dana J., Demeter J., Dumousseau M., Dwight SS., Gaulton A., Licata L., Melidoni AN., Ricard-Blum S., Roechert B., Skyzypek MS., Tiwari M., Velankar S., Wong ED., Hermjakob H., Orchard S.|Nucleic Acids Res.|2014
			The Saccharomyces Genome Database: Gene Product Annotation of Function, Process, and Component.|Cherry JM.|Cold Spring Harb Protoc.|2015
			The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.|Ball CA., Jin H., Sherlock G., Weng S., Matese JC., Andrada R., Binkley G., Dolinski K., Dwight SS., Harris MA., Issel-Tarver L., Schroeder M., Botstein D., Cherry JM.|Nucleic Acids Res.|2001
			SGD: Saccharomyces Genome Database.|Cherry JM., Adler C., Ball C., Chervitz SA., Dwight SS., Hester ET., Jia Y., Juvik G., Roe T., Schroeder M., Weng S., Botstein D.|Nucleic Acids Res.|1998
			Comparison of the complete protein sets of worm and yeast: orthology and divergence.|Chervitz SA., Aravind L., Sherlock G., Ball CA., Koonin EV., Dwight SS., Harris MA., Dolinski K., Mohr S., Smith T., Weng S., Cherry JM., Botstein D.|Science.|1998
			Yeast as a model organism.|Botstein D., Chervitz SA., Cherry JM.|Science.|1997
			Integrating functional genomic information into the Saccharomyces genome database.|Ball CA., Dolinski K., Dwight SS., Harris MA., Issel-Tarver L., Kasarskis A., Scafe CR., Sherlock G., Binkley G., Jin H., Kaloper M., Orr SD., Schroeder M., Weng S., Zhu Y., Botstein D., Cherry JM.|Nucleic Acids Res.|2000
			Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.|Chervitz SA., Hester ET., Ball CA., Dolinski K., Dwight SS., Harris MA., Juvik G., Malekian A., Roberts S., Roe T., Scafe C., Schroeder M., Sherlock G., Weng S., Zhu Y., Cherry JM., Botstein D.|Nucleic Acids Res.|1999
			Molecular linguistics: extracting information from gene and protein sequences.|Botstein D., Cherry JM.|Proc Natl Acad Sci U S A.|1997
			Genetic and physical maps of Saccharomyces cerevisiae.|Cherry JM., Ball C., Weng S., Juvik G., Schmidt R., Adler C., Dunn B., Dwight S., Riles L., Mortimer RK., Botstein D.|Nature.|1997
			Genetic nomenclature guide. Saccharomyces cerevisiae.|Cherry JM.|Trends Genet.|1995
		After:
			Standardized description of scientific evidence using the Evidence Ontology (ECO).|Chibucos MC., Mungall CJ., Balakrishnan R., Christie KR., Huntley RP., White O., Blake JA., Lewis SE., Giglio M.|Database (Oxford).|2014
			A guide to best practices for Gene Ontology (GO) manual annotation.|Balakrishnan R., Harris MA., Huntley R., Van Auken K., Cherry JM.|Database (Oxford).|2013
			CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.|Park J., Costanzo MC., Balakrishnan R., Cherry JM., Hong EL.|Database (Oxford).|2012
			Saccharomyces Genome Database: the genomics resource of budding yeast.|Cherry JM., Hong EL., et al., |Nucleic Acids Res.|2012
			Using Model Organism Databases (MODs).|Engel SR.|Current Protocols Essential Laboratory Techniques|2009
			New mutant phenotype data curation system in the Saccharomyces Genome Database.|Costanzo MC., Skrzypek MS., Nash R., Wong E., Binkley G, Engel SR., Hitz B., Hong EL., Cherry JM., and the Saccharomyces Genome Database Project.|Database (Oxford).|2009
			Expanded protein information at SGD: new pages and proteome browser.|Nash R., Weng S., et al.,|Nucleic Acids Res.|2007
			Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.|Fisk DG., Ball CA., Dolinski K., Engel SR., Hong EL., Issel-Tarver L., Schwartz K., Sethuraman A., Botstein D., Cherry JM.|Yeast.|2006
			Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.|Hirschman JE., Balakrishnan R., et al.,|Nucleic Acids Res.|2006
			Saccharomyces genome database: underlying principles and organisation. |Dwight SS., Balakrishnan R., et al.,|Brief Bioinform.|2004
			Saccharomyces Genome Database provides new regulation data.|Costanzo MC., Engel SR., Wong ED., Lloyd P., Karra K., Chan ET., Weng S., Paskov KM., Roe GR., Binkley G., Hitz BC., Cherry JM.|Nucleic Acids Res.|2014
			The reference genome sequence of Saccharomyces cerevisiae: then and now.|Engel SR., Dietrich FS., Fisk DG., Binkley G., Balakrishnan R., Costanzo MC., Dwight SS., Hitz BC., Karra K., Nash RS., Weng S., Wong ED., Lloyd P., Skrzypek MS., Miyasato SR., Simison M., Cherry JM.|G3 (Bethesda).|2014
			The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database.|Engel SR., Cherry JM.|Database (Oxford).|2013
			The YeastGenome app: the Saccharomyces Genome Database at your fingertips.|Wong ED., Karra K., Hitz BC., Hong EL., Cherry JM.|Database (Oxford).|2013
			 YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit.|Balakrishnan R., Park J., Karra K., Hitz BC., Binkley G., Hong EL., Sullivan J., Micklem G., Cherry JM.|Database (Oxford).|2012
			Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.|Chan ET., Cherry JM.|Database (Oxford).|2012
			Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study. |Costanzo MC., Park J., Balakrishnan R., Cherry JM., Hong EL.|Database (Oxford).|2011
			Saccharomyces Genome Database provides mutant phenotype data.|Engel SR., Balakrishnan R., et al.,|Nucleic Acids Res. |2010
			Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.|Christie KR., Hong EL., Cherry JM.|Trends Microbiol.|2009
			Gene Ontology annotations at SGD: new data sources and annotation methods.|Hong EL., Balakrishnan R., et al.,|Nucleic Acids Res.|2008
			Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).|Balakrishnan R., Christie KR., Costanzo MC., Dolinski K., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hong EL., Nash R., Oughtred R., Skrzypek M., Theesfeld CL., Binkley G., Dong Q., Lane C., Sethuraman A., Weng S., Botstein D., Cherry JM.|Nucleic Acids Res.|2005
			Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.|Christie KR., Weng S., et al.,|Nucleic Acids Res.|2004
			From one to many: expanding the Saccharomyces cerevisiae reference genome panel.|Engel SR., Weng S., Binkley G., Paskov K., Song G., Cherry JM.|Database (Oxford).|2016
			Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.|Weng S., Dong Q., Balakrishnan R., Christie K., Costanzo M., Dolinski K., Dwight SS., Engel S., Fisk DG., Hong E., Issel-Tarver L., Sethuraman A., Theesfeld C., Andrada R., Binkley G., Lane C., Schroeder M., Botstein D., Cherry JM.|Nucleic Acids Res.|2003
			Saccharomyces Genome Database|Issel-Tarver L., Christie KR., Dolinski K., Andrada R., Balakrishnan R., Ball CA., Binkley G., Dong S., Dwight SS., Fisk DG., Harris M., Schroeder M., Sethuraman A., Tse K., Weng S., Botstein D., Cherry JM.|Methods Enzymol.|2002
			The Saccharomyces Genome Database: A Tool for Discovery.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).|Dwight SS., Harris MA., Dolinski K., Ball CA., Binkley G., Christie KR., Fisk DG., Issel-Tarver L., Schroeder M., Sherlock G., Sethuraman A., Weng S., Botstein D., Cherry JM.|Nucleic Acids Res.|2002
			 The Saccharomyces Genome Database Variant Viewer.|Sheppard TK., Hitz BC., Engel SR., Song G., Balakrishnan R., Binkley G., Costanzo MC., Dalusag KS., Demeter J., Hellerstedt ST., Karra K., Nash RS., Paskov KM., Skrzypek MS., Weng S., Wong ED., Cherry JM.| Nucleic Acids Res.|2016
			The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Genetic and physical maps of Saccharomyces cerevisiae.|Cherry JM., Ball C., Weng S., Juvik G., Schmidt R., Adler C., Dunn B., Dwight S., Riles L., Mortimer RK., Botstein D.|Nature.|1997
			Expanding yeast knowledge online.|Dolinski K., Ball CA., Chervitz SA., Dwight SS., Harris MA., Roberts S., Roe T., Cherry JM., Botstein D.|Yeast.|1998
			The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant Phenotypes.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Biocuration at the Saccharomyces Genome Database.|Skrzypek MS., Nash RS.|Genesis.|2015
			AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae.|Song G., Dickins BJ., Demeter J., Engel S., Dunn B., Cherry JM.|PLoS One.|2015
			The complex portal - an encyclopaedia of macromolecular complexes.|Meldal BH., Forner-Martinez O., Costanzo MC., Dana J., Demeter J., Dumousseau M., Dwight SS., Gaulton A., Licata L., Melidoni AN., Ricard-Blum S., Roechert B., Skyzypek MS., Tiwari M., Velankar S., Wong ED., Hermjakob H., Orchard S.|Nucleic Acids Res.|2014
			The Saccharomyces Genome Database: Gene Product Annotation of Function, Process, and Component.|Cherry JM.|Cold Spring Harb Protoc.|2015
			The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining.|Cherry JM.|Cold Spring Harb Protoc.|2015
			Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.|Ball CA., Jin H., Sherlock G., Weng S., Matese JC., Andrada R., Binkley G., Dolinski K., Dwight SS., Harris MA., Issel-Tarver L., Schroeder M., Botstein D., Cherry JM.|Nucleic Acids Res.|2001
			SGD: Saccharomyces Genome Database.|Cherry JM., Adler C., Ball C., Chervitz SA., Dwight SS., Hester ET., Jia Y., Juvik G., Roe T., Schroeder M., Weng S., Botstein D.|Nucleic Acids Res.|1998
			Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.|Chervitz SA., Hester ET., Ball CA., Dolinski K., Dwight SS., Harris MA., Juvik G., Malekian A., Roberts S., Roe T., Scafe C., Schroeder M., Sherlock G., Weng S., Zhu Y., Cherry JM., Botstein D.|Nucleic Acids Res.|1999
			Comparison of the complete protein sets of worm and yeast: orthology and divergence.|Chervitz SA., Aravind L., Sherlock G., Ball CA., Koonin EV., Dwight SS., Harris MA., Dolinski K., Mohr S., Smith T., Weng S., Cherry JM., Botstein D.|Science.|1998
			Yeast as a model organism.|Botstein D., Chervitz SA., Cherry JM.|Science.|1997
			Integrating functional genomic information into the Saccharomyces genome database.|Ball CA., Dolinski K., Dwight SS., Harris MA., Issel-Tarver L., Kasarskis A., Scafe CR., Sherlock G., Binkley G., Jin H., Kaloper M., Orr SD., Schroeder M., Weng S., Zhu Y., Botstein D., Cherry JM.|Nucleic Acids Res.|2000
			Molecular linguistics: extracting information from gene and protein sequences.|Botstein D., Cherry JM.|Proc Natl Acad Sci U S A.|1997
			Genetic nomenclature guide. Saccharomyces cerevisiae.|Cherry JM.|Trends Genet.|1995
		Added:
			Saccharomyces Genome Database: the genomics resource of budding yeast.|Cherry JM., Hong EL., et al., |Nucleic Acids Res.|2012
			Expanded protein information at SGD: new pages and proteome browser.|Nash R., Weng S., et al.,|Nucleic Acids Res.|2007
			Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.|Hirschman JE., Balakrishnan R., et al.,|Nucleic Acids Res.|2006
			Saccharomyces genome database: underlying principles and organisation. |Dwight SS., Balakrishnan R., et al.,|Brief Bioinform.|2004
			Saccharomyces Genome Database provides mutant phenotype data.|Engel SR., Balakrishnan R., et al.,|Nucleic Acids Res. |2010
			Gene Ontology annotations at SGD: new data sources and annotation methods.|Hong EL., Balakrishnan R., et al.,|Nucleic Acids Res.|2008
			Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.|Christie KR., Weng S., et al.,|Nucleic Acids Res.|2004
		Removed:
			Saccharomyces Genome Database: the genomics resource of budding yeast.|Cherry JM., Hong EL., Amundsen C., Balakrishnan R., Binkley G., Chan ET., Christie KR., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hitz BC., Karra K., Krieger CJ., Miyasato SR., Nash RS., Park J., Skrzypek MS., Simison M., Weng S., Wong ED.|Nucleic Acids Res.|2012
			Saccharomyces Genome Database provides mutant phenotype data.|Engel SR., Balakrishnan R., Binkley G., Christie KR., Costanzo MC., Dwight SS., Fisk DG., Hirschman JE., Hitz BC., Hong EL., Krieger CJ., Livstone MS., Miyasato SR., Nash R., Oughtred R., Park J., Skrzypek MS., Weng S., Wong ED., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res. |2010
			Gene Ontology annotations at SGD: new data sources and annotation methods.|Hong EL., Balakrishnan R., Dong Q., Christie KR., Park J., Binkley G., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hitz BC., Krieger CJ., Livstone MS,. Miyasato SR., Nash RS., Oughtred R., Skrzypek MS., Weng S., Wong ED., Zhu KK., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res.|2008
			Expanded protein information at SGD: new pages and proteome browser.|Nash R., Weng S., Hitz B., Balakrishnan R., Christie KR., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hong EL., Livstone MS., Oughtred R., Park J, Skrzypek M., Theesfeld CL., Binkley G., Dong Q., Lane C., Miyasato S., Sethuraman A., Schroeder M., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res.|2007
			Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.|Hirschman JE., Balakrishnan R., Christie KR., Costanzo MC., Dwight SS., Engel SR., Fisk DG., Hong EL., Livstone MS., Nash R., Park J., Oughtred R., Skrzypek M., Starr B., Theesfeld CL., Williams J., Andrada R., Binkley G., Dong Q., Lane C., Miyasato S., Sethuraman A., Schroeder M., Thanawala MK., Weng S., Dolinski K., Botstein D., Cherry JM.|Nucleic Acids Res.|2006
			Saccharomyces genome database: underlying principles and organisation. |Dwight SS., Balakrishnan R., Christie KR., Costanzo MC., Dolinski K., Engel SR., Feierbach B., Fisk DG., Hirschman J., Hong EL., Issel-Tarver L., Nash RS., Sethuraman A., Starr B., Theesfeld CL., Andrada R., Binkley G., Dong Q., Lane C., Schroeder M., Weng S., Botstein D., Cherry JM.|Brief Bioinform.|2004
			Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.|Christie KR., Weng S., Balakrishnan R., Costanzo MC., Dolinski K., Dwight SS., Engel SR., Feierbach B., Fisk DG., Hirschman JE., Hong EL., Issel-Tarver L., Nash R., Sethuraman A., Starr B., Theesfeld CL., Andrada R., Binkley G., Dong Q., Lane C., Schroeder M., Botstein D., Cherry JM.|Nucleic Acids Res.|2004

Edits to 'https://fairsharing.org/FAIRsharing.pzvw40' by 'The FAIRsharing Team' at 14:50, 12 Jan 2018 (approved):

	'domains' has been modified:
		Before:
			Autonomously replicating sequence (ARS)||http://purl.obolibrary.org/obo/SO_0000436
			Centromere||http://purl.obolibrary.org/obo/GO_0000775
			Chromatin remodeling||http://purl.obolibrary.org/obo/GO_0006338
			Chromosomal element nomenclature||
			Citation||http://edamontology.org/data_0970
			Epigenetics||http://edamontology.org/topic_3295
			Free text||http://edamontology.org/data_3671
			Gene Ontology (GO) enrichment|None|http://edamontology.org/data_3754
			Gene array||http://purl.obolibrary.org/obo/SO_0005851
			Gene expression data|x|http://edamontology.org/data_2603
			Gene model annotation||http://purl.obolibrary.org/obo/FBcv_0003040
			Gene name||http://edamontology.org/data_2299
			Genetic strain||http://www.ebi.ac.uk/efo/EFO_0005135
			Genome|property|http://purl.obolibrary.org/obo/SO_0001026
			Image|None|http://edamontology.org/data_2968
			Life Science|domain|http://www.fairsharing.org/ontology/SRAO_0000069
			Literature annotations defined by experimental results||
			Molecular interactions|pathways and networks||http://edamontology.org/topic_0602
			Nucleotide||http://edamontology.org/format_1207
			Orthologous|None|http://purl.obolibrary.org/obo/SO_0000858
			Phenotype|information content entity|http://purl.obolibrary.org/obo/OGMS_0000023
			Plasmid|None|http://purl.obolibrary.org/obo/OBI_0000430
			Protein domain||http://edamontology.org/data_1468
			Proteomics|property|http://edamontology.org/topic_0121
			Pseudogene||http://purl.obolibrary.org/obo/SO_0000336
			Reference genome||http://purl.obolibrary.org/obo/SO_0001505
			Sequence feature||http://purl.obolibrary.org/obo/SO_0000110
			Synthetic genetic array|None|
			Systematic name||http://semanticscience.org/resource/CHEMINF_000106
			Transcriptomics|property|http://edamontology.org/topic_3308
			Transposable element||http://purl.obolibrary.org/obo/SO_0000101
		After:
			Autonomously replicating sequence (ARS)||http://purl.obolibrary.org/obo/SO_0000436
			Centromere||http://purl.obolibrary.org/obo/GO_0000775
			Chromatin remodeling||http://purl.obolibrary.org/obo/GO_0006338
			Chromosomal element nomenclature||
			Citation||http://edamontology.org/data_0970
			Epigenetics||http://edamontology.org/topic_3295
			Free text||http://edamontology.org/data_3671
			Gene Ontology (GO) enrichment|None|http://edamontology.org/data_3754
			Gene array||http://purl.obolibrary.org/obo/SO_0005851
			Gene expression data|x|http://edamontology.org/data_2603
			Gene model annotation||http://purl.obolibrary.org/obo/FBcv_0003040
			Gene name||http://edamontology.org/data_2299
			Genetic strain||http://www.ebi.ac.uk/efo/EFO_0005135
			Genome|property|http://purl.obolibrary.org/obo/SO_0001026
			Image|None|http://edamontology.org/data_2968
			Life Science|domain|http://www.fairsharing.org/ontology/SRAO_0000069
			Literature annotations defined by experimental results||
			Nucleotide||http://edamontology.org/format_1207
			Orthologous|None|http://purl.obolibrary.org/obo/SO_0000858
			Phenotype|information content entity|http://purl.obolibrary.org/obo/OGMS_0000023
			Plasmid|None|http://purl.obolibrary.org/obo/OBI_0000430
			Protein domain||http://edamontology.org/data_1468
			Proteomics|property|http://edamontology.org/topic_0121
			Pseudogene||http://purl.obolibrary.org/obo/SO_0000336
			Reference genome||http://purl.obolibrary.org/obo/SO_0001505
			Sequence feature||http://purl.obolibrary.org/obo/SO_0000110
			Synthetic genetic array|None|
			Systematic name||http://semanticscience.org/resource/CHEMINF_000106
			Transcriptomics|property|http://edamontology.org/topic_3308
			Transposable element||http://purl.obolibrary.org/obo/SO_0000101
			Molecular interaction|process|http://purl.obolibrary.org/obo/MI_0000
		Added:
			Molecular interaction|process|http://purl.obolibrary.org/obo/MI_0000
		Removed:
			Molecular interactions|pathways and networks||http://edamontology.org/topic_0602

Edits to 'https://fairsharing.org/FAIRsharing.pzvw40' by 'The FAIRsharing Team' at 22:01, 13 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Helpdesk
			Domain list has changed: 
			Previous values:
			ARS elements||
			Biochemical pathways||
			Centromeres||
			Chromatin modeling||
			Chromosomal element nomenclature||
			Chromosomal features including telomeres||
			Free text description||
			Gene Ontology annotation|x|
			Gene expression|property|
			Gene model||
			Gene nomenclature||
			Genetic and physical interactions (from BioGRID)||
			Genetic strain||
			Genome|property|http://purl.org/obo/owl/SO#SO_0001026
			Histone modification||
			Images|property|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11005
			Literature annotations defined by experimental results||
			Literature citation||
			Nucleotide||
			Orthology relationships||
			Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087
			Plasmids||
			Protein domains|x|
			Proteomics|property|
			Pseudogenes||
			Reference genome sequence||
			Synthetic genetic arrays||
			Systematic gene product names||
			Transcriptome|property|
			Transposable element||
			Yeast researchers||
			New values: 
			ARS elements||
			Biochemical pathways||
			Centromeres||
			Chromatin modeling||
			Chromosomal element nomenclature||
			Chromosomal features including telomeres||
			Free text description||
			Gene Ontology annotation|x|
			Gene expression|property|
			Gene model||
			Gene nomenclature||
			Genetic and physical interactions (from BioGRID)||
			Genetic strain||
			Genome|property|http://purl.org/obo/owl/SO#SO_0001026
			Histone modification||
			Images|property|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11005
			Literature annotations defined by experimental results||
			Literature citation||
			Nucleotide||
			Orthology relationships||
			Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087
			Plasmids||
			Protein domains|x|
			Proteomics|property|
			Pseudogenes||
			Reference genome sequence||
			Synthetic genetic arrays||
			Systematic gene product names||
			Transcriptome|property|
			Transposable element||
			Yeast researchers||
			Life Science|domain|
			Organisations have changed: 
			Previous values:
			Department of Genetics|School of Medicine|Stanford University|Stanford|California|USA
			National Human Genome Research Institute (NHGRI)|NIH
			National Human Genome Research Institute (NHGRI)|US National Institutes of Health (NIH)|Bethesda|Maryland|USA
			PHS HHS
			SGD
			New values: 
			Department of Genetics|School of Medicine|Stanford University|Stanford|California|USA
			National Human Genome Research Institute (NHGRI)|NIH
			US Department of Health and Human Services
			Saccharomyces Genome Database
			Grants have changed: 
			Previous values:
			5U41HG001315-18
			New values: 
			5U41HG001315-18
			2U41HG002273-13
		Added:
		Removed:

Support

General

blog	http://www.yeastgenome.org/blog
help	http://www.yeastgenome.org/help
online documentation	http://www.yeastgenome.org/about/technic ...
training	http://www.yeastgenome.org/help/video-tu ...
twitter	@yeastgenome
wikipedia	https://en.wikipedia.org/wiki/Saccharomy ...

Additional Information

Contact

Helpdesk

Tools

InterMine	https://www.intermine.org
search	http://www.yeastgenome.org/cgi-bin/seqTools
BLAST	http://www.yeastgenome.org/cgi-bin/blast-sgd.pl
analyze	http://yeastmine.yeastgenome.org/yeastmine/begin.do
submit	http://www.yeastgenome.org/cgi-bin/registry/geneRegistry
browse	http://www.yeastgenome.org/cache/PhenotypeTree.html
visualize	http://www.yeastgenome.org/help/sequence/synteny-viewer

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Versioning

no versioning policy

No link recorded

Data Release

daily release

No link recorded

Data Curation

manual curation

No link recorded

Data Access

Download	http://www.yeastgenome.org/download-data
web interface	No link recorded
file download(txt,tab-delimited)	No link recorded

Publications

Standardized description of scientific evidence using the Evidence Ontology (ECO).

Chibucos MC., Mungall CJ., Balakrishnan R., Christie KR., Huntley RP., White O., Blake JA., Lewis SE., Giglio M.
Database (Oxford). 2014

View Paper (PubMed)

A guide to best practices for Gene Ontology (GO) manual annotation.

Balakrishnan R., Harris MA., Huntley R., Van Auken K., Cherry JM.
Database (Oxford). 2013

View Paper (PubMed)

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.

Park J., Costanzo MC., Balakrishnan R., Cherry JM., Hong EL.
Database (Oxford). 2012

View Paper (PubMed)

Saccharomyces Genome Database: the genomics resource of budding yeast.

Cherry JM., Hong EL., et al.,
Nucleic Acids Res. 2012

View Paper (PubMed)

Using Model Organism Databases (MODs).

Engel SR.
Current Protocols Essential Laboratory Techniques 2009

View Publication

New mutant phenotype data curation system in the Saccharomyces Genome Database.

Costanzo MC., Skrzypek MS., Nash R., Wong E., Binkley G, Engel SR., Hitz B., Hong EL., Cherry JM., and the Saccharomyces Genome Database Project.
Database (Oxford). 2009

View Paper (PubMed)

Expanded protein information at SGD: new pages and proteome browser.

Nash R., Weng S., et al.,
Nucleic Acids Res. 2007

View Paper (PubMed)

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.

Fisk DG., Ball CA., Dolinski K., Engel SR., Hong EL., Issel-Tarver L., Schwartz K., Sethuraman A., Botstein D., Cherry JM.
Yeast. 2006

View Paper (PubMed)

Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.

Hirschman JE., Balakrishnan R., et al.,
Nucleic Acids Res. 2006

View Paper (PubMed)

Saccharomyces genome database: underlying principles and organisation.

Dwight SS., Balakrishnan R., et al.,
Brief Bioinform. 2004

View Paper (PubMed)

Saccharomyces Genome Database provides new regulation data.

Costanzo MC., Engel SR., Wong ED., Lloyd P., Karra K., Chan ET., Weng S., Paskov KM., Roe GR., Binkley G., Hitz BC., Cherry JM.
Nucleic Acids Res. 2014

View Paper (PubMed)

The reference genome sequence of Saccharomyces cerevisiae: then and now.

Engel SR., Dietrich FS., Fisk DG., Binkley G., Balakrishnan R., Costanzo MC., Dwight SS., Hitz BC., Karra K., Nash RS., Weng S., Wong ED., Lloyd P., Skrzypek MS., Miyasato SR., Simison M., Cherry JM.
G3 (Bethesda). 2014

View Paper (PubMed)

The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database.

Engel SR., Cherry JM.
Database (Oxford). 2013

View Paper (PubMed)

The YeastGenome app: the Saccharomyces Genome Database at your fingertips.

Wong ED., Karra K., Hitz BC., Hong EL., Cherry JM.
Database (Oxford). 2013

View Paper (PubMed)

YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose tool-kit.

Balakrishnan R., Park J., Karra K., Hitz BC., Binkley G., Hong EL., Sullivan J., Micklem G., Cherry JM.
Database (Oxford). 2012

View Paper (PubMed)

Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.

Chan ET., Cherry JM.
Database (Oxford). 2012

View Paper (PubMed)

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.

Costanzo MC., Park J., Balakrishnan R., Cherry JM., Hong EL.
Database (Oxford). 2011

View Paper (PubMed)

Saccharomyces Genome Database provides mutant phenotype data.

Engel SR., Balakrishnan R., et al.,
Nucleic Acids Res. 2010

View Paper (PubMed)

Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.

Christie KR., Hong EL., Cherry JM.
Trends Microbiol. 2009

View Paper (PubMed)

Gene Ontology annotations at SGD: new data sources and annotation methods.

Hong EL., Balakrishnan R., et al.,
Nucleic Acids Res. 2008

View Paper (PubMed)

Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).

Balakrishnan R., Christie KR., Costanzo MC., Dolinski K., Dwight SS., Engel SR., Fisk DG., Hirschman JE., Hong EL., Nash R., Oughtred R., Skrzypek M., Theesfeld CL., Binkley G., Dong Q., Lane C., Sethuraman A., Weng S., Botstein D., Cherry JM.
Nucleic Acids Res. 2005

View Paper (PubMed)

Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.

Christie KR., Weng S., et al.,
Nucleic Acids Res. 2004

View Paper (PubMed)

From one to many: expanding the Saccharomyces cerevisiae reference genome panel.

Engel SR., Weng S., Binkley G., Paskov K., Song G., Cherry JM.
Database (Oxford). 2016

View Paper (PubMed)

Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.

Weng S., Dong Q., Balakrishnan R., Christie K., Costanzo M., Dolinski K., Dwight SS., Engel S., Fisk DG., Hong E., Issel-Tarver L., Sethuraman A., Theesfeld C., Andrada R., Binkley G., Lane C., Schroeder M., Botstein D., Cherry JM.
Nucleic Acids Res. 2003

View Paper (PubMed)

Saccharomyces Genome Database

Issel-Tarver L., Christie KR., Dolinski K., Andrada R., Balakrishnan R., Ball CA., Binkley G., Dong S., Dwight SS., Fisk DG., Harris M., Schroeder M., Sethuraman A., Tse K., Weng S., Botstein D., Cherry JM.
Methods Enzymol. 2002

View Paper (PubMed)

The Saccharomyces Genome Database: A Tool for Discovery.

Cherry JM.
Cold Spring Harb Protoc. 2015

View Paper (PubMed)

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Dwight SS., Harris MA., Dolinski K., Ball CA., Binkley G., Christie KR., Fisk DG., Issel-Tarver L., Schroeder M., Sherlock G., Sethuraman A., Weng S., Botstein D., Cherry JM.
Nucleic Acids Res. 2002

View Paper (PubMed)

The Saccharomyces Genome Database Variant Viewer.

Sheppard TK., Hitz BC., Engel SR., Song G., Balakrishnan R., Binkley G., Costanzo MC., Dalusag KS., Demeter J., Hellerstedt ST., Karra K., Nash RS., Paskov KM., Skrzypek MS., Weng S., Wong ED., Cherry JM.
Nucleic Acids Res. 2016

View Paper (PubMed)

The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations.

Cherry JM.
Cold Spring Harb Protoc. 2015

View Paper (PubMed)

Genetic and physical maps of Saccharomyces cerevisiae.

Cherry JM., Ball C., Weng S., Juvik G., Schmidt R., Adler C., Dunn B., Dwight S., Riles L., Mortimer RK., Botstein D.
Nature. 1997

View Paper (PubMed)

Expanding yeast knowledge online.

Dolinski K., Ball CA., Chervitz SA., Dwight SS., Harris MA., Roberts S., Roe T., Cherry JM., Botstein D.
Yeast. 1998

View Paper (PubMed)

The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant Phenotypes.

Cherry JM.
Cold Spring Harb Protoc. 2015

View Paper (PubMed)

Biocuration at the Saccharomyces Genome Database.

Skrzypek MS., Nash RS.
Genesis. 2015

View Paper (PubMed)

AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae.

Song G., Dickins BJ., Demeter J., Engel S., Dunn B., Cherry JM.
PLoS One. 2015

View Paper (PubMed)

The complex portal - an encyclopaedia of macromolecular complexes.

Meldal BH., Forner-Martinez O., Costanzo MC., Dana J., Demeter J., Dumousseau M., Dwight SS., Gaulton A., Licata L., Melidoni AN., Ricard-Blum S., Roechert B., Skyzypek MS., Tiwari M., Velankar S., Wong ED., Hermjakob H., Orchard S.
Nucleic Acids Res. 2014

View Paper (PubMed)

The Saccharomyces Genome Database: Gene Product Annotation of Function, Process, and Component.

Cherry JM.
Cold Spring Harb Protoc. 2015

View Paper (PubMed)

The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining.

Cherry JM.
Cold Spring Harb Protoc. 2015

View Paper (PubMed)

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.

Ball CA., Jin H., Sherlock G., Weng S., Matese JC., Andrada R., Binkley G., Dolinski K., Dwight SS., Harris MA., Issel-Tarver L., Schroeder M., Botstein D., Cherry JM.
Nucleic Acids Res. 2001

View Paper (PubMed)

SGD: Saccharomyces Genome Database.

Cherry JM., Adler C., Ball C., Chervitz SA., Dwight SS., Hester ET., Jia Y., Juvik G., Roe T., Schroeder M., Weng S., Botstein D.
Nucleic Acids Res. 1998

View Paper (PubMed)

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

Chervitz SA., Hester ET., Ball CA., Dolinski K., Dwight SS., Harris MA., Juvik G., Malekian A., Roberts S., Roe T., Scafe C., Schroeder M., Sherlock G., Weng S., Zhu Y., Cherry JM., Botstein D.
Nucleic Acids Res. 1999

View Paper (PubMed)

Comparison of the complete protein sets of worm and yeast: orthology and divergence.

Chervitz SA., Aravind L., Sherlock G., Ball CA., Koonin EV., Dwight SS., Harris MA., Dolinski K., Mohr S., Smith T., Weng S., Cherry JM., Botstein D.
Science. 1998

View Paper (PubMed)

Yeast as a model organism.

Botstein D., Chervitz SA., Cherry JM.
Science. 1997

View Paper (PubMed)

Integrating functional genomic information into the Saccharomyces genome database.

Ball CA., Dolinski K., Dwight SS., Harris MA., Issel-Tarver L., Kasarskis A., Scafe CR., Sherlock G., Binkley G., Jin H., Kaloper M., Orr SD., Schroeder M., Weng S., Zhu Y., Botstein D., Cherry JM.
Nucleic Acids Res. 2000

View Paper (PubMed)

Molecular linguistics: extracting information from gene and protein sequences.

Botstein D., Cherry JM.
Proc Natl Acad Sci U S A. 1997

View Paper (PubMed)

Genetic nomenclature guide. Saccharomyces cerevisiae.

Cherry JM.
Trends Genet. 1995

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by stacia ORCID

Funds

National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)

Maintains

Saccharomyces Genome Database
United States Department of Health and Human Services (Government body)
Stanford University School of Medicine, CA, USA (University)

Grant Number(s)

2U41HG002273-13 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
5U41HG001315-18 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)

Saccharomyces Genome Database

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