databases > DOI:10.25504/FAIRsharing.q33qzy
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ready HGTree

General Information
The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an explicit evolutionary model of tree reconstruction and relies on evaluating the conflicts between phylogenetic tree of each orthologous gene set and corresponding 16S rRNA species tree. The database provides quick and easy access to HGT-related genes in hundreds of prokaryotic genomes and provides functionalities to detect HGT in user-customized datasets and gene and genome sequences. The database is freely available and can be easily scaled and updated to keep pace with the rapid rise in genomic information.

Homepage http://hgtree.snu.ac.kr

Countries that developed this resource Pakistan , South Korea

Created in 2014

Taxonomic range





How to cite this record FAIRsharing.org: HGTree; HGTree; DOI: https://doi.org/10.25504/FAIRsharing.q33qzy; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Oct 19 2021 2:15 p.m.


This record is maintained by anasir

Record added: Nov. 20, 2015, 7:45 a.m.
Record updated: Dec. 15, 2016, 12:49 p.m. by The FAIRsharing Team.

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Support

General

training http://hgtree.snu.ac.kr/tutorial.php?acc ...
twitter @NasirArshan

Additional Information

Contact Arshan Nasir   ORCID

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Applies to: Data use

Data Access

search http://hgtree.snu.ac.kr/search.php?access=s



Publications

HGTree: database of horizontally transferred genes determined by tree reconciliation

Hyeonsoo Jeong, Samsun Sung, Taehyung Kwon, Minseok Seo, Kelsey Caetano-Anollés, Sang Ho Choi5, Seoae Cho, Arshan Nasir, and Heebal Kim
Nucleic Acids Research 2015

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Credit

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  • This record is maintained by anasir

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Grant Number(s)

  • 14162MFDS 972 (Ministry of Food and Drug Safety, South Korea)