databases > DOI:10.25504/FAIRsharing.q33qzy

ready HGTree

General Information
The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an explicit evolutionary model of tree reconstruction and relies on evaluating the conflicts between phylogenetic tree of each orthologous gene set and corresponding 16S rRNA species tree. The database provides quick and easy access to HGT-related genes in hundreds of prokaryotic genomes and provides functionalities to detect HGT in user-customized datasets and gene and genome sequences. The database is freely available and can be easily scaled and updated to keep pace with the rapid rise in genomic information.

Homepage http://hgtree.snu.ac.kr

Countries that developed this resource Pakistan , South Korea

Created in 2014

Taxonomic range





How to cite this record FAIRsharing.org: HGTree; HGTree; DOI: https://doi.org/10.25504/FAIRsharing.q33qzy; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jun 21 2021 9:28 p.m.


This record is maintained by anasir

Record added: Nov. 20, 2015, 7:45 a.m.
Record updated: Dec. 15, 2016, 12:49 p.m. by The FAIRsharing Team.

Show edit history


Support

General

training http://hgtree.snu.ac.kr/tutorial.php?acc ...
twitter @NasirArshan

Additional Information

Contact Arshan Nasir   ORCID

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

search http://hgtree.snu.ac.kr/search.php?access=s



Publications

HGTree: database of horizontally transferred genes determined by tree reconciliation

Hyeonsoo Jeong, Samsun Sung, Taehyung Kwon, Minseok Seo, Kelsey Caetano-Anollés, Sang Ho Choi5, Seoae Cho, Arshan Nasir, and Heebal Kim
Nucleic Acids Research 2015

View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is maintained by anasir

Funds

Maintains

Grant Number(s)

  • 14162MFDS 972 (Ministry of Food and Drug Safety, South Korea)