databases > DOI:10.25504/FAIRsharing.qbt1gh
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ready SNPeffect

General Information
SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome. Further, SNPeffect holds per-variant annotations on functional sites, structural features and post-translational modification.

Homepage http://snpeffect.switchlab.org

Countries that developed this resource Belgium

Created in 2005

Taxonomic range

Subjects 





How to cite this record FAIRsharing.org: SNPeffect; SNPeffect; DOI: https://doi.org/10.25504/FAIRsharing.qbt1gh; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Sep 25 2021 2:23 p.m.


Record updated: Nov. 21, 2018, 10:08 a.m. by The FAIRsharing Team.

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Tools
Meta analysis: large scale mining and visualization of SNPeffect data http://snpeffect.switchlab.org/meta_analysis
Phenotypic analysis of custom single protein variants http://snpeffect.switchlab.org/snpeffect_jobs

Access / Retrieve Data

Conditions of Use


Data Release

monthly release No link recorded

Data Curation

automated curation No link recorded

Data Access

Log in http://snpeffect.switchlab.org/user
browse http://snpeffect.switchlab.org/sequences
file download (CSV, XLS) http://snpeffect.switchlab.org/about#Downloads



Publications

SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs.

Reumers J., Schymkowitz J., Ferkinghoff-Borg J., Stricher F., Serrano L., Rousseau F.,
Nucleic Acids Res. 2005

View Paper (PubMed) View Publication

SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs.

Reumers J., Maurer-Stroh S., Schymkowitz J., Rousseau F.,
Bioinformatics 2006

View Paper (PubMed) View Publication

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.

Reumers J., Conde L., Medina I., Maurer-Stroh S., Van Durme J., Dopazo J., Rousseau F., Schymkowitz J.,
Nucleic Acids Res. 2008

View Paper (PubMed) View Publication

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants.

De Baets G,Van Durme J,Reumers J,Maurer-Stroh S,Vanhee P,Dopazo J,Schymkowitz J,Rousseau F
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

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No identifier schema standards defined

Metrics

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Related Databases

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

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Funds

Maintains

Grant Number(s)

  • IUAP P6/43 (Federal Office for Scientific Affairs, Belgium)