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Castor Bean Ontology

Abbreviation: CO_347

General Information

The Castor Bean Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.

Homepage http://www.cropontology.org/ontology/CO_347

Developed in Worldwide

Created in 2017

Taxonomic range

Ricinus communis

Knowledge Domains BETA

Subjects BETA

User-defined Tags

Plant Phenotypes and Traits

How to cite this record FAIRsharing.org: CO_347; Castor Bean Ontology; DOI: https://doi.org/10.25504/FAIRsharing.qrrvyk; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Jan 23 2019 12:54 a.m.

Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: Sept. 4, 2018, 11:27 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.qrrvyk' by 'The FAIRsharing Team' at 11:27, 04 Sep 2018 (not approved):

	'dataProcesses' has been modified:
		Before:
			Download OBO Format
			Download RDF
			Download CSV
			Add new terms
			browse
		After:
			Download OBO Format
			Download RDF
			Download CSV
			Add new terms
			browse
			Annotation tool
		Added:
			Annotation tool
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.qrrvyk' by 'The FAIRsharing Team' at 16:30, 31 Aug 2018 (not approved):

	'related_standards' has been modified:
		Before:
			Crop Ontology
			Web Ontology Language
		After:
			Crop Ontology
			Web Ontology Language
			Phenotypic QualiTy Ontology
			Plant Ontology
			Plant Environmental Ontology
			Plant Trait Ontology
		Added:
			Phenotypic QualiTy Ontology
			Plant Ontology
			Plant Environmental Ontology
			Plant Trait Ontology
		Removed:

	'supportLinks' has been modified:
		Before:
			forum|http://www.cropontology.org/feedback
			online documentation|http://agroportal.lirmm.fr/ontologies/CO_347
		After:
			forum|http://www.cropontology.org/feedback
			help|http://www.cropontology.org/help
			online documentation|http://agroportal.lirmm.fr/ontologies/CO_347
		Added:
			help|http://www.cropontology.org/help
		Removed:

	'dataProcesses' has been modified:
		Before:
			Download OBO Format
			Download RDF
			Download CSV
		After:
			Download OBO Format
			Download RDF
			Download CSV
			Add new terms
			browse
		Added:
			Add new terms
			browse
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.qrrvyk' by 'The FAIRsharing Team' at 12:07, 12 Apr 2018 (approved):

	'in_curation' has been modified:
		Before: True
		After: False

Edits to 'https://fairsharing.org/FAIRsharing.qrrvyk' by 'The FAIRsharing Team' at 19:29, 25 Jan 2018 (approved):

	'accessPoints' has been modified:
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			REST|http://www.cropontology.org/api|Crop Ontology API
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			REST|http://www.cropontology.org/api|Crop Ontology API
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Edits to 'https://fairsharing.org/FAIRsharing.qrrvyk' by 'The FAIRsharing Team' at 19:44, 23 Jan 2018 (approved):

	'homepage' has been modified:
		Before: http://agroportal.lirmm.fr/ontologies/CO_347
		After: http://www.cropontology.org/ontology/CO_347

Support

General

forum	Crop Ontology Forum
help	Video tutorials
online documentation	Agroportal link

Additional Information

Contact

Crop Ontology Helpdesk

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Curation

Add new terms

http://www.cropontology.org/add-ontology

Data Access

Download OBO Format	http://www.cropontology.org/obo/CO_347
Download RDF	http://www.cropontology.org/ontology/CO_347/Castor%20bean/nt
Download CSV	http://www.cropontology.org/report?ontology_id=CO_347
browse	http://www.cropontology.org/ontology/CO_347
Annotation tool	http://www.cropontology.org/annotation-tool

REST Web Services

Crop Ontology API

http://www.cropontology.org/api

Publications

No publications available

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

AgroPortal
The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Maintains

CGIAR, Montpellier, France (Government body)

Castor Bean Ontology

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