standards > model/format > DOI:10.25504/FAIRsharing.qz0rvm


ready Variant Effect Predictor data format

Abbreviation: VEP


General Information
A text format devised by Ensembl for the eponymous Variant Effect Predictor tool.



How to cite this record FAIRsharing.org: VEP; Variant Effect Predictor data format; DOI: https://doi.org/10.25504/FAIRsharing.qz0rvm; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 17 2018 10:37 a.m.


Record updated: Nov. 24, 2016, 10:52 a.m. by The FAIRsharing Team.

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Support

General

Additional Information

TeSS training resources 

Ensembl variant effect predictor vep webinar



Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

The Ensembl Variant Effect Predictor.

McLaren W,Gil L,Hunt SE,Riat HS,Ritchie GR,Thormann A,Flicek P,Cunningham F
Genome Biol 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (1)
Ensembl
The Ensembl project is based at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

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Funds

Grant Number(s)

  • 200754 (European Commission FP7)

  • 222664 (European Commission FP7)

  • WT095908 (Wellcome Trust, UK)

  • WT098051 (Wellcome Trust, UK)