standards > model/format > DOI:10.25504/FAIRsharing.r0r2wd


ready Root System Markup Language

Abbreviation: RSML


General Information
RSML follows the XML standard to store 2D or 3D image metadata, plant and root properties and geometries, continuous functions along individual root paths and a suite of annotations at the image, plant or root scales, at one or several time points. Plant ontologies are used to describe botanical entities that are relevant at the scale of root system architecture. An xml-schema describes the features and constraints of RSML and open-source packages have been developed in several languages (R, Excel, Java, Python, C#) to enable researchers to integrate RSML files into popular research workflow.

Homepage http://rootsystemml.github.io/

Developed in Austria , Belgium , France , Germany , United Kingdom

Taxonomic range

Knowledge Domains  BETA

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How to cite this record FAIRsharing.org: RSML; Root System Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.r0r2wd; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Mar 26 2019 1:56 p.m.


Record added: Feb. 20, 2015, 10:17 p.m.
Record updated: March 15, 2018, 10:13 a.m. by The FAIRsharing Team.

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Support

General

online documentation http://rootsystemml.github.io/examples/

Additional Information

Contact Xavier Draye   ORCID

Tools

    No tools defined


Schemas

No XSD schemas defined


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Publications

Root system markup language: toward a unified root architecture description language.

Lobet G,Pound MP,Diener J,Pradal C,Draye X,Godin C,Javaux M,Leitner D,Meunier F,Nacry P,Pridmore TP,Schnepf A
Plant Physiol 2015

View Paper (PubMed) View Publication

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Models and Formats

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Funds

Grant Number(s)

  • P7/29 (Belgian Science Policy Office (Belspo), Belgium)

  • ANR–11–BSV6–0018 (The French National Research Agency (ANR), France)