databases > DOI:10.25504/FAIRsharing.r3pbp3

ready CAPS-DB : a structural classification of helix-capping motifs

Abbreviation:CAPS-DB

General Information
CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.

Homepage http://www.bioinsilico.org/CAPSDB

Developed in Spain , United Kingdom , United States

Created in 2011

Taxonomic range





How to cite this record FAIRsharing.org: CAPS-DB ; CAPS-DB : a structural classification of helix-capping motifs; DOI: https://doi.org/10.25504/FAIRsharing.r3pbp3; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 16 2019 4:20 p.m.


Record updated: Sept. 2, 2016, 1:49 p.m. by The FAIRsharing Team.

Show edit history


Support

General

help http://www.bioinsilico.org/cgi-bin/CAPSD ...

Additional Information

Contact Narcis Fernandez-Fuentes   ORCID


Access / Retrieve Data

Conditions of Use


Data Versioning

versioning by date No link recorded
access to historical files available No link recorded

Data Release

biannual release No link recorded

Data Curation

automated classification No link recorded
manual curation (post-classification quality control) No link recorded

Data Access

file download(txt) No link recorded
Java applets No link recorded
SQL database dump No link recorded
MySQL database dump No link recorded
browse http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/browse
search http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/query



Publications

Helix capping.

Aurora R., Rose GD.,
Protein Sci. 1998

View Paper (PubMed) View Publication

An automated classification of the structure of protein loops.

Oliva B., Bates PA., Querol E., Avilés FX., Sternberg MJ.,
J. Mol. Biol. 1997

View Paper (PubMed) View Publication

CAPS-DB: a structural classification of helix-capping motifs.

Segura J,Oliva B,Fernandez-Fuentes N
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • BIO2011-22568 (MICINN, Madrid, Spain)