databases > DOI:10.25504/FAIRsharing.rb2drw
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ready InnateDB

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General Information
InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.

Homepage http://www.innatedb.com/

Countries that developed this resource Australia , Canada , Republic of Ireland

Created in 2007



In the following recommendations:




How to cite this record FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Sep 27 2021 6:13 a.m.


Record updated: April 21, 2021, 9:41 a.m. by The FAIRsharing Team.

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In Collections
EMBL-ABR
International Molecular Exchange Consortium (IMEx)



Access / Retrieve Data

Conditions of Use

Applies to: General

Data Curation

manual curation https://www.innatedb.com/doc/InnateDB_2011_curation_guide.pdf

Data Access

Download InnateDB Curated Interactions http://www.innatedb.com/redirect.do?go=downloadCurated
Browse http://www.innatedb.com/browse.jsp
Advanced Search for Genes and Proteins http://www.innatedb.com/redirect.do?go=searchMols
Advanced Search for Interactions http://www.innatedb.com/redirect.do?go=searchIntxs
Pathway Advanced Search http://www.innatedb.com/redirect.do?go=searchPws
Download Imported Experimentally Validated Interactions http://www.innatedb.com/redirect.do?go=downloadImported
InnateDB Innate Immunity Genes https://www.innatedb.com/annotatedGenes.do?type=innatedb

Other Web Services

PSICQUIC web services http://www.innatedb.com/accessViaWS.jsp


Publications

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.

Breuer K., Foroushani AK., Laird MR., Chen C., Sribnaia A., Lo R., Winsor GL., Hancock RE., Brinkman FS., Lynn DJ.,
Nucleic Acids Res. 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined




Credit

Record Maintainer

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Funds

Maintains

Undefined

Grant Number(s)

  • 419 ( Canadian Institutes of Health Research, Ottawa, ON, Canada)

  • 12ASI1 (Allergan)

  • 12B&B2 (Allergan)