standards > terminology artifact > DOI:10.25504/FAIRsharing.rbp5wp


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ready IBP Crop Research Ontology

Abbreviation: CO_715


General Information
The IBP Crop Research Ontology describes experimental design, environmental conditions and methods associated with the crop study/experiment/trait and their evaluation. It has been adapted from the database management system (DMS) and germplasm management system (GMS) of the International Crop Information System (ICIS) model. This ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms.



How to cite this record FAIRsharing.org: CO_715; IBP Crop Research Ontology; DOI: https://doi.org/10.25504/FAIRsharing.rbp5wp; Last edited: Sept. 4, 2018, 4:45 p.m.; Last accessed: Nov 20 2018 10:27 p.m.


Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: Sept. 4, 2018, 4:45 p.m. by The FAIRsharing Team.

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Terminology Artifacts

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Implementing Databases (3)
Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.

AgroPortal
The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Brassica Information Portal
The Brassica Information Portal is a web repository for population and trait scoring information related to the Brassica breeding community. It provides information about quantitative trait loci and links curated Brassica phenotype experimental data with genotype information stored in external data sources. Advanced data submission capabilities and APIs enable users to store and publish their own study results in BIP. The repository can be easily browsed thanks to a set of user-friendly query interfaces.

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