standards > model/format > DOI:10.25504/FAIRsharing.reqeqw


ready Biological Dynamics Markup Language

Abbreviation: BDML


General Information
Biological Dynamics Markup Language is an open unified format for representing quantitative data of biological dynamics. BDML can describe a wide variety of spatiotemporal dynamics of biological objects from molecules to cells to organisms.

Homepage http://ssbd.qbic.riken.jp/bdml/

Developed in Japan

Created in 2013

Taxonomic range







How to cite this record FAIRsharing.org: BDML; Biological Dynamics Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.reqeqw; Last edited: March 15, 2018, 11:55 a.m.; Last accessed: Oct 20 2018 2:01 p.m.


This record is maintained by kkyoda  ORCID

Record added: Sept. 2, 2016, 2:44 a.m.
Record updated: March 15, 2018, 11:28 a.m. by The FAIRsharing Team.

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Additional Information



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Publications

Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data

Kyoda, K., Tohsato, Y., Ho, K.H.L., Onami, S.
Bioinformatics 2015

View Paper (PubMed) View Publication

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Models and Formats

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Implementing Databases (1)
SSBD: Systems Science of Biological Dynamics
SSBD is a database that collects and shares quantitative biological dynamics data, microscopy images, and software tools. SSBD provides a rich set of resources for analyzing quantitative biological data, such as single-molecule, cell, and gene expression nuclei. Quantitative biological data are collected from a variety of species, sources and methods. These include data obtained from both experiment and computational simulation.

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