standards > terminology artifact > DOI:10.25504/FAIRsharing.rf4pmz


ready Ontology for Systems Chemical Biology and Chemogenomics

Abbreviation: Chem2Bio2RDF


General Information
Chem2Bio2RDF has been created by aggregating data from multiple chemogenomics repositories and is cross-linked into Bio2RDF and LODD. There is also a linked-path generation tool to facilitate SPARQL query generation, and have created extended SPARQL functions to address specific chemical/biological search needs. Chem2Bio2RDF can be used to investigate polypharmacology, identification of potential multiple pathway inhibitors, and the association of pathways with adverse drug reactions.

Homepage http://cheminfov.informatics.indiana.edu:8080/c2b2r/

Developed in United States

Created in 2009

Taxonomic range

Knowledge Domains  BETA




How to cite this record FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Feb 19 2019 8:22 a.m.


Record updated: April 11, 2018, 2:54 p.m. by The FAIRsharing Team.

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Support

General

online documentation wiki (Wikispaces will close in 2018)

Additional Information

Contact Bin Chen

External Links

Bioportal http://bioportal.bioontology.org/ontologies/CHEMBIO

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use


Data Access

Browse Sources (Wikispaces will close in 2018) http://chem2bio2rdf.wikispaces.com/individual+sources
Download Triples http://cheminfov.informatics.indiana.edu:8080/download.html



Publications

Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data.

Chen B,Dong X,Jiao D,Wang H,Zhu Q,Ding Y,Wild DJ
BMC Bioinformatics 2010

View Paper (PubMed) View Publication

CHEMBIO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
Bio2RDF
Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.

Implementing Policies

This record is not implemented by any policy.


Credit

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Maintains