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Eukaryotic Linear Motifs

Abbreviation:ELM

General Information

This computational biology resource mainly focuses on annotation and detection of eukaryotic linear motifs (ELMs) by providing both a repository of annotated motif data and an exploratory tool for motif prediction. ELMs, or short linear motifs (SLiMs), are compact protein interaction sites composed of short stretches of adjacent amino acids.

Homepage http://elm.eu.org

Countries that developed this resource European Union , Germany

Created in 2003

Taxonomic range

Eukaryota

Knowledge Domains

Subjects

User-defined Tags

Eukaryotic Linear Motif

Polypeptide motif

Short Linear Motif (SLiM)

How to cite this record FAIRsharing.org: ELM; Eukaryotic Linear Motifs; DOI: https://doi.org/10.25504/FAIRsharing.rj3kj5; Last edited: April 16, 2021, 3:54 p.m.; Last accessed: Jul 27 2021 4:55 p.m.

Record updated: April 16, 2021, 11:04 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.rj3kj5' by 'The FAIRsharing Team' at 11:04, 16 Apr 2021 (approved):

	'organizations' has been modified:
		Before:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			Cellzome, GSK, Middlesex, UK.|https://www.gsk.com/en-gb/|Funds
			Universitetet i Bergen|http://www.uib.no/en/mbi|Maintains
			European Commission FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
			European FP6 EMBRACE project|http://www.embrace-project.eu|Funds
		After:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			Cellzome, GSK, Middlesex, UK.|https://www.gsk.com/en-gb/|Funds
			European Commission FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
			European FP6 EMBRACE project|http://www.embrace-project.eu|Funds
			Universitetet i Bergen|http://www.uib.no/en/mbi|Maintains
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Added:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Removed:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined

	'publications' has been modified:
		Before:
			ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.|Puntervoll P., Linding R., Gemnd C., Chabanis-Davidson S., Mattingsdal M., Cameron S., Martin DM., Ausiello G., Brannetti B., Costantini A., Ferr F., Maselli V., Via A., Cesareni G., Diella F., Superti-Furga G., Wyrwicz L., Ramu C., McGuigan C., Gudavalli R., Letunic I., Bork P., Rychlewski L., Kster B., Helmer-Citterich M., Hunter WN., Aasland R., Gibson TJ., |Nucleic Acids Res.|2003
			ELM 2016--data update and new functionality of the eukaryotic linear motif resource.|Dinkel H,Van Roey K,Michael S,Kumar M,Uyar B,Altenberg B,Milchevskaya V,Schneider M,Kuhn H,Behrendt A,Dahl SL,Damerell V,Diebel S,Kalman S,Klein S,Knudsen AC,Mader C,Merrill S,Staudt A,Thiel V,Welti L,Davey NE,Diella F,Gibson TJ|Nucleic Acids Res|2015
			ELM--the database of eukaryotic linear motifs.|Dinkel H,Michael S,Weatheritt RJ,Davey NE,Van Roey K,Altenberg B,Toedt G,Uyar B,Seiler M,Budd A,Jodicke L,Dammert MA,Schroeter C,Hammer M,Schmidt T,Jehl P,McGuigan C,Dymecka M,Chica C,Luck K,Via A,Chatr-Aryamontri A,Haslam N,Grebnev G,Edwards RJ,Steinmetz MO,Meiselbach H,Diella F,Gibson TJ|Nucleic Acids Res|2011
		After:
			ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.|Puntervoll P. et al.|Nucleic Acids Res.|2003
			ELM 2016--data update and new functionality of the eukaryotic linear motif resource.|Dinkel H,Van Roey K,Michael S,Kumar M,Uyar B,Altenberg B,Milchevskaya V,Schneider M,Kuhn H,Behrendt A,Dahl SL,Damerell V,Diebel S,Kalman S,Klein S,Knudsen AC,Mader C,Merrill S,Staudt A,Thiel V,Welti L,Davey NE,Diella F,Gibson TJ|Nucleic Acids Res|2015
			ELM--the database of eukaryotic linear motifs.|Dinkel H. et al.|Nucleic Acids Res|2011
		Added:
			ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.|Puntervoll P. et al.|Nucleic Acids Res.|2003
			ELM--the database of eukaryotic linear motifs.|Dinkel H. et al.|Nucleic Acids Res|2011
		Removed:
			ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.|Puntervoll P., Linding R., Gemnd C., Chabanis-Davidson S., Mattingsdal M., Cameron S., Martin DM., Ausiello G., Brannetti B., Costantini A., Ferr F., Maselli V., Via A., Cesareni G., Diella F., Superti-Furga G., Wyrwicz L., Ramu C., McGuigan C., Gudavalli R., Letunic I., Bork P., Rychlewski L., Kster B., Helmer-Citterich M., Hunter WN., Aasland R., Gibson TJ., |Nucleic Acids Res.|2003
			ELM--the database of eukaryotic linear motifs.|Dinkel H,Michael S,Weatheritt RJ,Davey NE,Van Roey K,Altenberg B,Toedt G,Uyar B,Seiler M,Budd A,Jodicke L,Dammert MA,Schroeter C,Hammer M,Schmidt T,Jehl P,McGuigan C,Dymecka M,Chica C,Luck K,Via A,Chatr-Aryamontri A,Haslam N,Grebnev G,Edwards RJ,Steinmetz MO,Meiselbach H,Diella F,Gibson TJ|Nucleic Acids Res|2011

Edits to 'https://fairsharing.org/FAIRsharing.rj3kj5' by 'The FAIRsharing Team' at 09:44, 14 Oct 2016 (approved):

	'name' has been modified:
		Before: Database of Eukaryotic Linear Motifs
		After: Eukaryotic Linear Motifs

In Collections

RDA Covid-19 WG Resources

Support

General

help	http://elm.eu.org/infos/help.html
wikipedia	https://en.wikipedia.org/wiki/Eukaryotic ...

Additional Information

Contact

ELM feedback email

Tools

BLAST	http://elm.eu.org/combined_search?query=blast
Browse	http://elm.eu.org/elms/browse_instances.html
Search	http://elm.eu.org/search/

Access / Retrieve Data

Conditions of Use

Applies to: Data use

ELM Academic License Agreement

Data Release

ad-hoc release

No link recorded

Data Curation

manual curation

No link recorded

Data Access

web interface	No link recorded
file download(tab-delimited,images)	No link recorded
XML web service	No link recorded

Publications

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Puntervoll P. et al.
Nucleic Acids Res. 2003

View Paper (PubMed)

ELM 2016--data update and new functionality of the eukaryotic linear motif resource.

Dinkel H,Van Roey K,Michael S,Kumar M,Uyar B,Altenberg B,Milchevskaya V,Schneider M,Kuhn H,Behrendt A,Dahl SL,Damerell V,Diebel S,Kalman S,Klein S,Knudsen AC,Mader C,Merrill S,Staudt A,Thiel V,Welti L,Davey NE,Diella F,Gibson TJ
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

ELM--the database of eukaryotic linear motifs.

Dinkel H. et al.
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)
Cellzome, GSK, Middlesex, UK. (Company)
European Commission FP7 (Government body)
European FP6 EMBRACE project (Government body)
European Commission under FP7 Grant Agreement (Government body)

Maintains

Universitetet i Bergen (University)

Grant Number(s)

242129 (European Commission FP7)

Eukaryotic Linear Motifs

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