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The Protein Database

Abbreviation:Protein

Recommended

General Information

The Entrez Protein search and retrieval system contains protein entries that have been compiled from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq.

Homepage http://www.ncbi.nlm.nih.gov/protein

Countries that developed this resource United States

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: Protein; The Protein Database; DOI: https://doi.org/10.25504/FAIRsharing.rtndct; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 26 2022 8:57 p.m.

Record updated: June 24, 2021, 11:01 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.rtndct' by 'The FAIRsharing Team' at 11:01, 24 Jun 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
		After:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			The Protein Database Attribution required|https://www.ncbi.nlm.nih.gov/protein|Data
		Added:
			The Protein Database Attribution required|https://www.ncbi.nlm.nih.gov/protein|Data
		Removed:
			Attribution required||Data

Edits to 'https://fairsharing.org/FAIRsharing.rtndct' by 'The FAIRsharing Team' at 13:22, 22 Mar 2021 (approved):

	'standardsImplemented' has been modified:
		Before:
		After:
			FASTA Sequence Format
		Added:
			FASTA Sequence Format
		Removed:

	'related_databases' has been modified:
		Before:
			Conserved Domain Database
			The Chemical Probes Portal
		After:
			GenBank
			Conserved Domain Database
			Reference Sequence Database
			PIR SuperFamily
			SWISS-MODEL Repository of 3D protein structure models
			The Chemical Probes Portal
			Protein Data Bank
		Added:
			GenBank
			Reference Sequence Database
			PIR SuperFamily
			SWISS-MODEL Repository of 3D protein structure models
			Protein Data Bank
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			Database resources of the National Center for Biotechnology Information.|NCBI Resource Coordinators|Nucleic Acids Res.|2013
			Database resources of the National Center for Biotechnology Information.||Nucleic Acids Res|2015
		After:
			Database resources of the National Center for Biotechnology Information.|NCBI Resource Coordinators|Nucleic Acids Res.|2013
			Database resources of the National Center for Biotechnology Information.|NCBI Resource Coordinators|Nucleic Acids Res|2015
		Added:
			Database resources of the National Center for Biotechnology Information.|NCBI Resource Coordinators|Nucleic Acids Res|2015
		Removed:
			Database resources of the National Center for Biotechnology Information.||Nucleic Acids Res|2015

Edits to 'https://fairsharing.org/FAIRsharing.rtndct' by 'The FAIRsharing Team' at 12:28, 21 Dec 2016 (approved):

	'name' has been modified:
		Before: NCBI Entrez Protein Search
		After: The Protein Database

Support

General

FAQ	http://www.ncbi.nlm.nih.gov/books/NBK495 ...
help	http://www.ncbi.nlm.nih.gov/books/NBK448 ...

Additional Information

Contact

General Enquiries

Tools

BLAST	http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS= ...
LinkOut	http://www.ncbi.nlm.nih.gov/projects/linkout/
Batch Entrez	http://www.ncbi.nlm.nih.gov/sites/batchentrez

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Download

ftp://ftp.ncbi.nlm.nih.gov/genbank/;ftp://ftp.ncbi.nih.gov/refseq/

Publications

Database resources of the National Center for Biotechnology Information.

NCBI Resource Coordinators
Nucleic Acids Res. 2013

View Paper (PubMed) View Publication

Database resources of the National Center for Biotechnology Information.

NCBI Resource Coordinators
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains

National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)

The Protein Database

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