databases > DOI:10.25504/FAIRsharing.rwd4wq
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ready cis-Regulatory Element Database

Abbreviation:cisRED

General Information
The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data.

Homepage http://www.cisred.org/

Countries that developed this resource Canada

Created in 2005

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How to cite this record FAIRsharing.org: cisRED; cis-Regulatory Element Database; DOI: https://doi.org/10.25504/FAIRsharing.rwd4wq; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Sep 22 2020 4:21 a.m.


Record updated: Sept. 27, 2016, 5:58 p.m. by The FAIRsharing Team.

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Data Access

analyze http://www.cisred.org/content/software/



Publications

cisRED: a database system for genome-scale computational discovery of regulatory elements.

Robertson G., Bilenky M., Lin K., He A., Yuen W., Dagpinar M., Varhol R., Teague K., Griffith OL., Zhang X., Pan Y., Hassel M., Sleumer MC., Pan W., Pleasance ED., Chuang M., Hao H., Li YY., Robertson N., Fjell C., Li B., Montgomery SB., Astakhova T., Zhou J., Sander J., Siddiqui AS., Jones SJ.,
Nucleic Acids Res. 2006

View Paper (PubMed)

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