standards > model/format > DOI:10.25504/FAIRsharing.rz77m6


ready Transition Markup Language

Abbreviation: HUPO-PSI TraML


General Information
The HUPO PSI Mass Spectrometry Standards Working Group (MSS WG) has developed a specification for a standardized format for the exchange and transmission of transition lists for selected reaction monitoring (SRM) experiments. This specification has now completed rigorous review with the PSI document process and is complete

Homepage http://www.psidev.info/traml

Developed in Belgium , Germany , Switzerland , United Kingdom , United States

Created in 2010

Taxonomic range







How to cite this record FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 15, 2018, 11:55 a.m.; Last accessed: Oct 20 2018 1:26 p.m.


This record is maintained by HUPO PSI  (HUPOPSI)

Record updated: March 15, 2018, 11:03 a.m. by The FAIRsharing Team.

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In Collections
HUPO Proteomics Standards Initiative


Support

General

Mailing List None
online documentation http://www.peptideatlas.org/schemas/TraM ...
online documentation http://www.peptideatlas.org/schemas/TraM ...

Additional Information

Contact General Contact

Tools
TraML Converter http://iomics.ugent.be/jtraml 1.0

Schemas
  • Name: TRAML
  • Version: 1.0.0
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Conditions of Use





Publications

TraML--a standard format for exchange of selected reaction monitoring transition lists.

Deutsch EW,Chambers M,Neumann S,Levander F,Binz PA,Shofstahl J,Campbell DS,Mendoza L,Ovelleiro D,Helsens K,Martens L,Aebersold R,Moritz RL,Brusniak MY
Mol Cell Proteomics 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined


Implementing Databases (1)
PRoteomics IDEntifications database
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • FP7 'ProteomeXchange' 260558 (European Commission)

  • GM087221 (US National Institute of General Medical Sciences, (NIGMS))

  • HG005805 (National Human Genome Research Institute)

  • N01- HV -28179 (National Heart Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA)