standards > terminology artifact > DOI:10.25504/FAIRsharing.s19src
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ready Systems Biology Ontology

Abbreviation: SBO


General Information
The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modelling. It consists of seven orthogonal vocabularies defining: reaction participants roles (e.g. "substrate"), quantitative parameters (e.g. "Michaelis constant"), classification of mathematical expressions describing the system (e.g. "mass action rate law"), modelling framework used (e.g. "logical framework"), the nature of the entity (e.g. "macromolecule"), the type of interaction (e.g. "process"), as well as a branch to define the different types of metadata that may be present within a model. Use of such terms introduces a layer of semantic information into the standard description of a model, facilitating its interpretation and efficient reuse.

Homepage http://www.ebi.ac.uk/sbo/

Countries that developed this resource Worldwide

Created in 2006

Taxonomic range




How to cite this record FAIRsharing.org: SBO; Systems Biology Ontology; DOI: https://doi.org/10.25504/FAIRsharing.s19src; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jul 30 2021 5:42 p.m.


This record is maintained by nsjuty

Record added: Jan. 21, 2016, 10:30 a.m.
Record updated: June 23, 2021, 12:07 p.m. by The FAIRsharing Team.

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Support

General

Additional Information

External Links


Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Data Access


REST Web Services



Publications

Controlled vocabularies and semantics in systems biology.

Courtot M,Juty N,Knupfer C et al.
Mol Syst Biol 2011

View Paper (PubMed) View Publication

SBO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.




Related Databases (3)
BioModels
BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.

BioSimulators
BioSimulators is a registry of containerized biosimulation tools that provide consistent command-line interfaces. The BioSimulations web application helps investigators browse this registry to find simulation tools that have the capabilities (supported modeling frameworks, simulation algorithms, and modeling formats) needed for specific modeling projects.

BioSimulations
BioSimulations is a web application for sharing and re-using biomodels, simulations, and visualizations of simulations results. BioSimulations supports a wide range of modeling frameworks (e.g., kinetic, constraint-based, and logical modeling), model formats (e.g., BNGL, CellML, SBML), and simulation tools (e.g., COPASI, libRoadRunner/tellurium, NFSim, VCell). BioSimulations aims to help researchers discover published models that might be useful for their research and quickly try them via a simple web-based interface.

Implementing Policies

This record is not implemented by any policy.