UniProt Knowledgebase
Abbreviation:UniProtKB
Homepage http://www.uniprot.org/uniprot/
Countries that developed this resource Switzerland , United Kingdom , United States
Created in 2002
Taxonomic range
Knowledge Domains
Subjects
User-defined Tags
In the following recommendations:
How to cite this record FAIRsharing.org: UniProtKB; UniProt Knowledgebase; DOI: https://doi.org/10.25504/FAIRsharing.s1ne3g; Last edited: April 7, 2020, 12:27 p.m.; Last accessed: May 29 2020 10:08 p.m.
Publication for citation UniProt: the universal protein knowledgebase. ; Nucleic Acids Res ; 2016; 10.1093/nar/gkw1099;
Record updated: April 7, 2020, 11:56 a.m. by The FAIRsharing Team.
| FAQ | https://www.uniprot.org/help/?fil=sectio ... |
| contact form | Contact |
| online documentation | http://www.uniprot.org/help/ |
| training | Youtube channel |
| @uniprot |
Additional Information
| Contact | General contact |
TeSS training resources
| SPARQL Endpoint | https://sparql.uniprot.org |
Conditions of Use
Applies to: Data useData Curation
| Biocuration | http://www.uniprot.org/help/biocuration |
Data Access
| Download | http://www.uniprot.org/downloads |
| Browse | https://www.uniprot.org/uniprot/ |
| Text search | https://www.uniprot.org/uniprot/ |
| BLAST | http://www.uniprot.org/blast/ |
REST Web Services
| REST API | https://www.uniprot.org/help/api |
Other Web Services
| Java remote API | https://www.ebi.ac.uk/uniprot/japi/index.html |
UniProt: a hub for protein information
The UniProt Consortium
Nucleic Acids Res. 2015
UniProt: the universal protein knowledgebase.
Nucleic Acids Res 2016
UniProt: a worldwide hub of protein knowledge.
Nucleic Acids Res 2018
UniProt: the universal protein knowledgebase.
UniProt Consortium T
Nucleic Acids Res 2018
UniProt: the universal protein knowledgebase.
Nucleic Acids Res 2016
UniProt Tools.
Pundir S,Martin MJ,O'Donovan C
Curr Protoc Bioinformatics 2016
Activities at the Universal Protein Resource (UniProt).
Nucleic Acids Res 2013
Update on activities at the Universal Protein Resource (UniProt) in 2013.
Nucleic Acids Res 2012
The UniProt-GO Annotation database in 2011.
Dimmer EC,Huntley RP,Alam-Faruque Y,Sawford T,O'Donovan C,Martin MJ,Bely B,Browne P,Mun Chan W,Eberhardt R,Gardner M,Laiho K,Legge D,Magrane M,Pichler K,Poggioli D,Sehra H,Auchincloss A,Axelsen K,Blatter MC,Boutet E,Braconi-Quintaje S,Breuza L,Bridge A,Coudert E,Estreicher A,Famiglietti L,Ferro-Rojas S,Feuermann M,Gos A,Gruaz-Gumowski N,Hinz U,Hulo C,James J,Jimenez S,Jungo F,Keller G,Lemercier P,Lieberherr D,Masson P,Moinat M,Pedruzzi I,Poux S,Rivoire C,Roechert B,Schneider M,Stutz A,Sundaram S,Tognolli M,Bougueleret L,Argoud-Puy G,Cusin I,Duek-Roggli P,Xenarios I,Apweiler R
Nucleic Acids Res 2011
UniProt Knowledgebase: a hub of integrated protein data.
Magrane M
Database (Oxford) 2011
The Universal Protein Resource (UniProt) in 2010.
Nucleic Acids Res 2009
The Universal Protein Resource (UniProt) 2009.
Nucleic Acids Res 2008
The universal protein resource (UniProt).
Nucleic Acids Res 2007
UniProtKB/Swiss-Prot.
Boutet E,Lieberherr D,Tognolli M,Schneider M,Bairoch A
Methods Mol Biol 2008
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Wu CH,Apweiler R,Bairoch A,Natale DA,Barker WC,Boeckmann B,Ferro S,Gasteiger E,Huang H,Lopez R,Magrane M,Martin MJ,Mazumder R,O'Donovan C,Redaschi N,Suzek B
Nucleic Acids Res 2005
The Universal Protein Resource (UniProt).
Bairoch A,Apweiler R,Wu CH,Barker WC,Boeckmann B,Ferro S,Gasteiger E,Huang H,Lopez R,Magrane M,Martin MJ,Natale DA,O'Donovan C,Redaschi N,Yeh LS
Nucleic Acids Res 2004
UniProt archive.
Leinonen R,Diez FG,Binns D,Fleischmann W,Lopez R,Apweiler R
Bioinformatics 2004
The SWISS-PROT protein sequence database: its relevance to human molecular medical research.
Bairoch A,Apweiler R
J Mol Med (Berl) 1997
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- Dragon Antimicrobial Peptide Database
- LegumeIP
- MitoMiner
- Pfam
- ProtoNet
- Rhea
- SNPeffect
- Gene3D
- neXtProt
- WikiPathways
- Whole-Cell Knowledge Base
- Comparative Toxicogenomics Database
- HOmo sapiens transcription factor COmprehensive MOdel COllection (HOCOMOCO)
- Influenza Research Database
- Agile Protein Interactomes Dataserver
- Europe PubMed Central
- Gene Ontology Annotation Database
- Protein Data Bank in Europe
- Ensembl
- STRING
- ArchDB
- ProDom
- VirHostNet 2.0
- IUPHAR/BPS Guide to PHARMACOLOGY
- Pathway Commons
- Biological General Repository for Interaction Datasets
- PIR SuperFamily
- PRofils pour l'Identification Automatique du Metabolisme
- The Vertebrate Genome Annotation Database
- UniPathway
- PRINTS
- Antimicrobial Peptide Database
- European Variation Archive
- FlyMine
- MouseMine @ MGI
- MobiDB
- Immunology Database and Analysis Portal
- MoonProt
- GeneWeaver
- Host Pathogen Interaction Database
- ENCODE Project
- MetaNetX
- Clinical Knowledgebase
- Wikidata
- Proteome-pI : proteome isoelectric point database
- Target Central Resource Database
- Open Targets
- Ensembl Genomes
- Enzyme Portal
- Orthologous MAtrix
- ViralZone
- PMut Data Repository
- Mutual Folding Induced by Binding Database
- Target Pathogen
- Disordered Binding Sites Database
- ChannelsDB
- Mechanism and Catalytic Site Atlas
- Small angle scattering biological data bank
- Vertebrate Secretome Database
- HypoxiaDB
- Genome3D
- InParanoid
- MitoProteome
- Ashbya Genome Database
- PDZscape
- PROtein-protein compleX MutAtion ThErmodynamics Database
- Complex Portal
- HymenopteraMine
- RatMine
- WormMine
- HumanMine
- MedicMine
- BovineMine
- CHOmine
- An INtegrated Data warehouse of mIcrobial GenOmes
- TargetMine
- ThaleMine
- WITHDRAWN: A Resource for Withdrawn and Discontinued Drugs
- Protein Data Bank in Europe - Knowledge Base
- PathBank
- Chlamydiae Database
- Agronomic Linked Data
- TISSUES
- GlyGen: Computational and Informatics Resources for Glycoscience
- eLibrary of Microbial Systematics and Genomics
- Information Commons for Rice
- iDog
- PathosSystems Resource Integration Center Repository
- Nature Publishing Group - Nature Cell Biology - Availability of Data and materials
- Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition
- MNI Open Research
- African Academy of Sciences Open Research Data Guidelines for Authors
- Wellcome Open Research Data Guidelines
- Nature Publishing Group - Nature Genetics - Availability of Data and materials
- Springer Nature Research Data Policy Type 1
- Cell Press - Trends In Biochemical Sciences - Instructions for Authors
- Nature Publishing Group - Nature Biotechnology - Availability of Data and materials
- Nature Publishing Group - Nature Materials - Availability of Data and materials
- Rockefeller University Press - Journal Of Cell Biology - Data Deposition
- F1000Research Data Policy
- Springer Nature - Nature Chemistry - Availability of Data and materials
- Cell Press - Cell - Information for Authors
- HRB Open Research
- Cell Press - Cell Host & Microbe - Information for Authors
- Cell Press - Cancer Cell - Information for Authors
- eLife Recommended Repositories and Standards
- Springer Nature - Nature Immunology - Availability of Data and materials
- Springer Nature - Nature - Availability of Data and materials
- Springer Nature - Nature Methods - Availability of Data and Materials
- UCL Child Open Health Research
- Springer Nature - Nature Medicine - Availability of Data and materials
- Cell Press - Trends In Plant Science - Information for Authors
- Springer Nature Research Data Policy Type 2 (for life sciences)
- GigaScience - Minimum Standards of Reporting Checklist
- Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council
- Springer Nature Research Data Policy Type 4
- Springer Nature Research Data Policy Type 3 (for life sciences)
- Cell Press - Cell Metabolism - Information for Authors
- Cell Press - Molecular Cell - Information for Authors
- Gates Open Research Data Guidelines
- Elsevier's Data Policy
- American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability
- Genetics & Genomics Next
- Cell Press - Developmental Cell - Information for Authors
- Springer Nature Research Data Policy Type 2
- Springer Nature Research Data Policy Type 3
- Cell Press - Neuron - Information for Authors
- Cell Press - Cell Stem Cell - Information for Authors
- Cell Press - Immunity - Information for Authors
- PLOS Recommended Data Repositories
- Springer Nature - Research Data Policies
- Cell Press - Current Biology - Information for Authors
- Nature Publishing Group - Nature Structural & Molecular Biology - Availability of Data and materials
- American Society for Clinical Investigation - Journal of Clinical Investigation - Information for Authors
- Nature Publishing Group - Nature Chemical Biology - Availability of Data and materials
- Springer Nature - Nature Photonics - Availability of Data and materials
- Scientific Data Data Policy
- BioMed Central - Minimum Standards of Reporting Checklist
- Elsevier - Current Opinion in Cell Biology - Guide for Authors
- National Academy of Sciences - Proceedings of the National Academy of Sciences - Editorial Policies
- EMBO Press Recommended Databases and Data Standards
Record Maintainer
This record is maintained by uniprot
Funds
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)
British Heart Foundation (Charitable foundation)
Swiss Federal Government (SERI) (Government body)
National Science Foundation (NSF), USA (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
Maintains
Grant Number(s)
DBI-1062520 (National Science Foundation (NSF), USA)
G-1307 (Parkinson's Disease UK (PDUK))
G08LM010720 (National Institutes of Health (NIH), Bethesda, MD, USA)
P20GM103446 (National Institutes of Health (NIH), Bethesda, MD, USA)
R01GM080646 (National Institutes of Health (NIH), Bethesda, MD, USA)
RG/13/5/30112 (British Heart Foundation)
U41HG007822 (National Institutes of Health (NIH), Bethesda, MD, USA)
U41HG02273 (National Institutes of Health (NIH), Bethesda, MD, USA)
