databases > DOI:10.25504/FAIRsharing.s22qdj

ready UCSC Genome Browser database

General Information
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.

Homepage http://genome.ucsc.edu

Developed in United States

Created in 2001

Taxonomic range






How to cite this record FAIRsharing.org: UCSC Genome Browser database; UCSC Genome Browser database; DOI: https://doi.org/10.25504/FAIRsharing.s22qdj; Last edited: Feb. 22, 2018, 2:44 p.m.; Last accessed: Nov 13 2018 4:53 p.m.


This record is maintained by dkarolchik  and BrianLee  ORCID

Record updated: Nov. 24, 2017, 7:55 p.m. by The FAIRsharing Team.



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Conditions of Use

Applies to: General

Data Versioning

Data Release

Data Curation

Data Access




Publications

The UCSC Genome Browser database: extensions and updates 2013

Meyer LR, Zweig AS, Hinrichs AS, Karolchik D, Kuhn RM, et al.
Nucleic Acids Res 2013

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The UCSC Table Browser data retrieval tool

Karolchik D., Hinrichs AS., Furey TS., Roskin KM., Sugnet CW., Haussler D., Kent WJ.,
Nucleic Acids Res. 2004

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The human genome browser at UCSC

Kent WJ., Sugnet CW., Furey TS., Roskin KM., Pringle TH., Zahler AM., Haussler D.,
Genome Res. 2002

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ENCODE data in the UCSC Genome Browser: year 5 update

Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ
Nucleic Acids Res. 2013

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BLAT--the BLAST-like alignment tool.

Kent WJ.,
Genome Res. 2002

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Exploring relationships and mining data with the UCSC Gene Sorter

Kent WJ, Hsu F, Karolchik D, Kuhn RM, Clawson H, Trumbower H, Haussler D
Genome Res. 2005

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The UCSC Genome Browser

Karolchik D, Hinrichs AS, Kent WJ
Curr Protoc Bioinformatics 2012

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Initial sequencing and analysis of the human genome

Lander ES., Linton LM., Birren B., Nusbaum C., Zody MC., Baldwin J., Devon K., Dewar K., Doyle M., FitzHugh W., Funke R. et al.
Nature 2001

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Assembly of the working draft of the human genome with GigAssembler.

Kent WJ., Haussler D.,
Genome Res. 2001

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The UCSC Genome Browser database: 2016 update.

Speir ML,Zweig AS,Rosenbloom KR,Raney BJ,Paten B,Nejad P,Lee BT,Learned K,Karolchik D,Hinrichs AS,Heitner S,Harte RA,Haeussler M,Guruvadoo L,Fujita PA,Eisenhart C,Diekhans M,Clawson H,Casper J,Barber GP,Haussler D,Kuhn RM,Kent WJ
Nucleic Acids Res 2015

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The UCSC Genome Browser database: 2015 update.

Rosenbloom KR,Armstrong J,Barber GP,Casper J,Clawson H,Diekhans M,Dreszer TR,Fujita PA,Guruvadoo L,Haeussler M,Harte RA,Heitner S,Hickey G,Hinrichs AS,Hubley R,Karolchik D,Learned K,Lee BT,Li CH,Miga KH,Nguyen N,Paten B,Raney BJ,Smit AF,Speir ML,Zweig AS,Haussler D,Kuhn RM,Kent WJ
Nucleic Acids Res 2014

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The UCSC Genome Browser database: 2017 update.

Tyner C,Barber GP,Casper J,Clawson H,Diekhans M,Eisenhart C,Fischer CM,Gibson D,Gonzalez JN,Guruvadoo L,Haeussler M,Heitner S,Hinrichs AS,Karolchik D,Lee BT,Lee CM,Nejad P,Raney BJ,Rosenbloom KR,Speir ML,Villarreal C,Vivian J,Zweig AS,Haussler D,Kuhn RM,Kent WJ
Nucleic Acids Res 2016

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