Zebrafish anatomy and development
Abbreviation: ZFA
Homepage https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources
Countries that developed this resource United States
Created in 1999
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: ZFA; Zebrafish anatomy and development; DOI: https://doi.org/10.25504/FAIRsharing.s3r6sk; Last edited: Dec. 11, 2019, 4:16 p.m.; Last accessed: Sep 19 2020 3:32 a.m.
Record updated: Dec. 3, 2019, 3:11 p.m. by The FAIRsharing Team.
| forum | ZFIN Term Requests |
Additional Information
| Contact | curators@zfin.org |
External Links
| Bioportal | http://bioportal.bioontology.org/ontologies/ZFA |
| OBO | http://obofoundry.org/ontology/zfa.html |
No XSD schemas defined
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.
Van Slyke CE,Bradford YM,Westerfield M,Haendel MA
J Biomed Semantics 2014
View in BioPortal.
View in OBO Foundry.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.
The Zebrafish Information Network
The Zebrafish Information Network, ZFIN, serves as the primary community database resource for the laboratory use of zebrafish. We develop and support integrated zebrafish genetic, genomic, developmental and physiological information and link this information extensively to corresponding data in other model organism and human databases.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
Domain-centric GO
Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, ontological terms associated with pairs of domains, triplets and longer supra-domains are also provided.
This record is not implemented by any policy.
Record Maintainer
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Funds
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
U.S. National Library of Medicine (Government body)
National Science Foundation (NSF), USA (Government body)
Maintains
ZFIN administrators (Consortium)
Grant Number(s)
BDI-0641025 (National Science Foundation (NSF), USA)
HG002659 (U.S. National Library of Medicine)
HG004838 (U.S. National Library of Medicine)
