databases > DOI:10.25504/FAIRsharing.sFzdV7
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ready Protein Data Bank in Europe - Knowledge Base

Abbreviation:PDBe-KB

General Information
PDBe-KB (Protein Data Bank in Europe - Knowledge Base) is a community-driven resource managed by the PDBe team, collating functional annotations and predictions for structure data in the PDB archive. PDBe-KB is a collaborative effort between PDBe and a diverse group of bioinformatics resources and research teams. The goal of PDBe-KB is two-fold: (i) to increase the visibility and reduce the fragmentation of annotations contributed by specialist data resources, and to make these data more findable, accessible, interoperable and reusable (FAIR) and (ii) to place macromolecular structure data in their biological context, thus facilitating their use by the broader scientific community in fundamental and applied research.

Homepage http://pdbe-kb.org

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2018

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How to cite this record FAIRsharing.org: PDBe-KB; Protein Data Bank in Europe - Knowledge Base; DOI: https://doi.org/10.25504/FAIRsharing.sFzdV7; Last edited: April 24, 2020, 3:45 p.m.; Last accessed: Sep 25 2021 10:55 p.m.

Publication for citation  PDBe-KB: a community-driven resource for structural and functional annotations. ; Nucleic Acids Res ; 2019; 10.1093/nar/gkz853;


This record is maintained by agutmanas  ORCID

Record added: May 13, 2019, 2:42 p.m.
Record updated: April 24, 2020, 8:59 a.m. by The FAIRsharing Team.

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RDA Covid-19 WG Resources

Support

General

support email PDBe Helpdesk
online documentation News
online documentation Collaboration Guidelines
online documentation Collaborators

Additional Information

Contact Mihaly Varadi

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Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Download https://www.ebi.ac.uk/pdbe/pdbe-kb/graph-download

Data Access

Search: Aggregated View of Proteins https://www.ebi.ac.uk/pdbe/pdbe-kb/protein

REST Web Services

PDBe API for PDBe-KB https://www.ebi.ac.uk/pdbe/graph-api/pdbe_doc/


Publications

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins.

Dana JM,Gutmanas A,Tyagi N,Qi G,O'Donovan C,Martin M,Velankar S
Nucleic Acids Res 2018

View Paper (PubMed) View Publication

PDBe-KB: a community-driven resource for structural and functional annotations.


Nucleic Acids Res 2019

View Paper (PubMed) View Publication

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