CHEMical INFormation Ontology

Abbreviation: CHEMINF

General Information

The Chemical Information Ontology (CHEMINF) aims to establish a standard in representing chemical information. In particular, it aims to produce an ontology to represent chemical structure and to richly describe chemical properties, whether intrinsic or computed.

Homepage https://github.com/semanticchemistry/semanticchemistry

Countries that developed this resource Netherlands

Created in 2010

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: CHEMINF; CHEMical INFormation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.sjhvyy; Last edited: March 14, 2019, 1:17 p.m.; Last accessed: May 20 2019 1:57 a.m.

Publication for citation The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web. Hastings J,Chepelev L,Willighagen E,Adams N,Steinbeck C,Dumontier M; PLoS One ; 2011; 10.1371/journal.pone.0025513;

Record updated: March 14, 2019, 1:16 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.sjhvyy' by 'The FAIRsharing Team' at 13:16, 14 Mar 2019 (approved):

	'organizations' has been modified:
		Before:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Chemical Information Ontology (CHEMINF) Administrators|http://code.google.com/p/semanticchemistry/|Maintains
			National Center for Biomedical Ontology (NCBO), Stanford, CA, USA|http://www.bioontology.org/|Maintains
			Uppsala University, Sweden|http://www.uu.se|Maintains
		After:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Chemical Information Ontology (CHEMINF) Administrators|http://code.google.com/p/semanticchemistry/|Maintains
			National Center for Biomedical Ontology (NCBO), Stanford, CA, USA|http://www.bioontology.org/|Maintains
			Uppsala University, Sweden|http://www.uu.se|Maintains,Funds
		Added:
			Uppsala University, Sweden|http://www.uu.se|Maintains,Funds
		Removed:
			Uppsala University, Sweden|http://www.uu.se|Maintains

	'supportLinks' has been modified:
		Before:
			online documentation|https://github.com/egonw/semanticchemistry
		After:
			forum|https://github.com/semanticchemistry/semanticchemistry/issues
		Added:
			forum|https://github.com/semanticchemistry/semanticchemistry/issues
		Removed:
			online documentation|https://github.com/egonw/semanticchemistry

	'description' has been modified:
		Before:   The Chemical Information Ontology (CHEMINF), is a formal ontology pertaining to chemical information entities that is being developed collaboratively within the context of the OBO Foundry.  The ontology  is implemented with the Web Ontology Language (OWL2). ChEMINF includes; chemical graphs, chemical descriptors, as well as algorithms and chemical data representation formalisms and formats.
		After: The Chemical Information Ontology (CHEMINF) aims to establish a standard in representing chemical information. In particular, it aims to produce an ontology to represent chemical structure and to richly describe chemical properties, whether intrinsic or computed.

	'licences' has been modified:
		Before:
			Creative Commons Attribution-ShareAlike 3.0 Unported (CC BY-SA 3.0)|https://creativecommons.org/licenses/by-sa/3.0/|Data
		After:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Added:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Removed:
			Creative Commons Attribution-ShareAlike 3.0 Unported (CC BY-SA 3.0)|https://creativecommons.org/licenses/by-sa/3.0/|Data

	'yearOfCreation' has been modified:
		Before: None
		After: 2010

	'miriam_id' has been modified:
		Before: None
		After: 

	'homepage' has been modified:
		Before: http://purl.bioontology.org/ontology/CHEMINF
		After: https://github.com/semanticchemistry/semanticchemistry

Edits to 'https://fairsharing.org/FAIRsharing.sjhvyy' by 'The FAIRsharing Team' at 11:15, 31 Aug 2016 (approved):

	'description' has been modified:
		Before: "CHEMical INFormation Ontology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/CHEMINF. This text was generated automatically. If you work on the project responsible for "CHEMical INFormation Ontology" then please consider helping us  by claiming this record  and updating it appropriately.
		After:   The Chemical Information Ontology (CHEMINF), is a formal ontology pertaining to chemical information entities that is being developed collaboratively within the context of the OBO Foundry.  The ontology  is implemented with the Web Ontology Language (OWL2). ChEMINF includes; chemical graphs, chemical descriptors, as well as algorithms and chemical data representation formalisms and formats. Domain list has changed:  Previous values: Biochemistry|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100610 Chemistry|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100618 Molecular entity|material|http://purl.obolibrary.org/obo/CHEBI_23367 Molecular structure|information content entity|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Chemical.owl#CHEBI_24431 New values:  Biochemistry|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100610 Chemistry|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100618 Molecular entity|material|http://purl.obolibrary.org/obo/CHEBI_23367 Molecular structure|information content entity|http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Chemical.owl#CHEBI_24431 Life Science|domain| Organisations have changed:  Previous values: CHEMINF administrators New values:  CHEMINF administrators National Centre for Biomedical Ontology Biotechnology and Biological Sciences Research Council|UK Uppsala University|Sweden Grants have changed:  Previous values: New values:  BB/G022747/1 KoF 07

In Collections

OBO Foundry

Chemistry

Support

General

forum

GitHub Issue Tracker

Additional Information

Contact

Egon Willighagen

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/CHEMINF
OBO	http://obofoundry.org/ontology/cheminf.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Publications

The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web.

Hastings J,Chepelev L,Willighagen E,Adams N,Steinbeck C,Dumontier M
PLoS One 2011

View Paper (PubMed) View Publication

CHEMINF Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Uppsala University, Sweden (University)

Maintains

Chemical Information Ontology (CHEMINF) Administrators (Consortium) Lead
National Center for Biomedical Ontology (NCBO), Stanford, CA, USA (Research institute)
Uppsala University, Sweden (University)

Grant Number(s)

BB/G022747/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
KoF 07 (Uppsala University, Sweden)

CHEMical INFormation Ontology

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