standards > terminology artifact > DOI:10.25504/FAIRsharing.sjhvyy


ready CHEMical INFormation Ontology

Abbreviation: CHEMINF


General Information
The Chemical Information Ontology (CHEMINF) aims to establish a standard in representing chemical information. In particular, it aims to produce an ontology to represent chemical structure and to richly describe chemical properties, whether intrinsic or computed.

Homepage https://github.com/semanticchemistry/semanticchemistry

Countries that developed this resource Netherlands

Created in 2010

Taxonomic range




How to cite this record FAIRsharing.org: CHEMINF; CHEMical INFormation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.sjhvyy; Last edited: July 9, 2019, 10:24 a.m.; Last accessed: Jul 20 2019 7:12 p.m.

Publication for citation  The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web. Hastings J,Chepelev L,Willighagen E,Adams N,Steinbeck C,Dumontier M; PLoS One ; 2011; 10.1371/journal.pone.0025513;


Record updated: July 8, 2019, 3:23 p.m. by The FAIRsharing Team.

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In Collections
OBO Foundry
Chemistry



Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web.

Hastings J,Chepelev L,Willighagen E,Adams N,Steinbeck C,Dumontier M
PLoS One 2011

View Paper (PubMed) View Publication

CHEMINF Ontology Display

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Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

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Implementing Databases (3)
ChEMBL
ChEMBL is an open large-scale bioactivity database containing information largely manually extracted from the medicinal chemistry literature. Information regarding the compounds tested (including their structures), the biological or physicochemical assays performed on these and the targets of these assays are recorded in a structured form, allowing users to address a broad range of drug discovery questions.
PubChem
PubChem is organized as three linked databases within the NCBI's Entrez information retrieval system. These are PubChem Substance, PubChem Compound, and PubChem BioAssay. PubChem also provides a fast chemical structure similarity search tool. More information about using each component database may be found using the links in the homepage.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

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This record is not implemented by any policy.


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Grant Number(s)

  • BB/G022747/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • KoF 07 (Uppsala University, Sweden)