SoftWare Ontology

Abbreviation: SWO

General Information

The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. SWO also covers software manufacturer, input and output data types and the uses (i.e. objectives) to which the software can be put.

Homepage https://github.com/allysonlister/swo

Countries that developed this resource United Kingdom

Created in 2011

Taxonomic range

Not applicable

Knowledge Domains

Subjects

User-defined Tags

General purpose

How to cite this record FAIRsharing.org: SWO; SoftWare Ontology; DOI: https://doi.org/10.25504/FAIRsharing.sp3szt; Last edited: Feb. 11, 2020, 1:47 p.m.; Last accessed: Oct 25 2020 8:30 p.m.

Publication for citation The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation. Malone J,Brown A,Lister AL,Ison J,Hull D,Parkinson H,Stevens R; J Biomed Semantics ; 2014; 10.1186/2041-1480-5-25;

This record is maintained by allysonlister ORCID

Record updated: Feb. 11, 2020, 1:46 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 13:46, 11 Feb 2020 (approved):

	'supportLinks' has been modified:
		Before:
			blog|https://softwareontology.wordpress.com
		After:
			blog|https://softwareontology.wordpress.com
			forum|https://github.com/allysonlister/swo/issues
		Added:
			forum|https://github.com/allysonlister/swo/issues
		Removed:

	'contactORCID' has been modified:
		Before: 0000-0002-1615-2899
		After: 0000-0002-7702-4495

	'countries' has been modified:
		Before:
			European Union
		After:
			United Kingdom
		Added:
			United Kingdom
		Removed:
			European Union

	'dataProcesses' has been modified:
		Before:
			Download (OWL)
		After:
			Download (OWL)
			Browse (OLS)
		Added:
			Browse (OLS)
		Removed:

	'contactEmail' has been modified:
		Before: malone@ebi.ac.uk
		After: allyson.lister@oerc.ox.ac.uk

	'contact' has been modified:
		Before: James Malone
		After: Allyson Lister

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 16:36, 11 Dec 2019 (approved):

	'taxonomies' has been modified:
		Before:
			All
		After:
			Not applicable
		Added:
			Not applicable
		Removed:
			All

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 17:27, 02 Dec 2019 (approved):

	'taxonomies' has been modified:
		Before:
			Not applicable
		After:
			All
		Added:
			All
		Removed:
			Not applicable

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 10:42, 13 Mar 2019 (approved):

	'licences' has been modified:
		Before:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
		After:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Added:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Removed:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data

	'onto_disciplines' has been modified:
		Before:
			Ontology and Terminology
		After:
			Computer Science
			Ontology and Terminology
		Added:
			Computer Science
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			Download (OWL)
		Added:
			Download (OWL)
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 14:02, 15 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Jisc, Bristol, UK|http://www.jisc.ac.uk|Funds
			SWO administrators|https://github.com/allysonlister/swo|Maintains
			School of Medicine, University of Manchester, Manchester M13 9PT, UK|https://www.bmh.manchester.ac.uk|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Jisc, Bristol, UK|http://www.jisc.ac.uk|Funds
			SWO administrators|https://github.com/allysonlister/swo|Maintains
			School of Medicine, University of Manchester, Manchester M13 9PT, UK|https://www.bmh.manchester.ac.uk|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
			Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK|http://www.oerc.ox.ac.uk|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
			Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK|http://www.oerc.ox.ac.uk|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 11:40, 28 Mar 2017 (approved):

	'homepage' has been modified:
		Before: http://theswo.sourceforge.net
		After: https://github.com/allysonlister/swo

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 23:03, 13 Oct 2016 (approved):

	'homepage' has been modified:
		Before: http://purl.bioontology.org/ontology/SWO
		After: http://theswo.sourceforge.net Organisations have changed:  Previous values: European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK SWO administrators New values:  European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK Engineering and Physical Science Research Council (EPSRC)|UK SWO administrators School of Medicine|University of Manchester|Manchester M13 9PT|UK. Jisc Support links have changed:  Previous values: New values:  https://softwareontology.wordpress.com Licenses have changed:  Previous values: New values:  Apache License Grants have changed:  Previous values: New values:  EP/G026238/1 EP/C536444/1

Edits to 'https://fairsharing.org/FAIRsharing.sp3szt' by 'The FAIRsharing Team' at 22:48, 13 Oct 2016 (approved):

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-1615-2899 Publication List has changed:  Previous values: New values:  The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis|curation and digital preservation. Organisations have changed:  Previous values: SWO administrators New values:  SWO administrators European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK

In Collections

FAIRDOM Community Standards

Support

General

blog	SWO Blog
forum	GitHub Issue Tracker

Additional Information

Contact

Allyson Lister ORCID

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/SWO
OBO	http://obofoundry.org/ontology/swo.html

Tools

Access via OLS (EBI)

http://www.ebi.ac.uk/ols/ontologies/swo

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

Download (OWL)

http://purl.obolibrary.org/obo/swo.owl

Data Access

Browse (OLS)

https://www.ebi.ac.uk/ols/ontologies/swo

Publications

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.

Malone J,Brown A,Lister AL,Ison J,Hull D,Parkinson H,Stevens R
J Biomed Semantics 2014

View Paper (PubMed) View Publication

SWO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (1)

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by allysonlister ORCID

Funds

Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)
Jisc, Bristol, UK (Company)

Maintains

SWO administrators (Consortium) Lead
School of Medicine, University of Manchester, Manchester M13 9PT, UK (University)
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute)
Oxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford, UK (Research institute)

Grant Number(s)

EP/C536444/1 (Engineering and Physical Sciences Research Council (EPSRC), UK)
EP/G026238/1 (Engineering and Physical Sciences Research Council (EPSRC), UK)

SoftWare Ontology

We need your help!

Developed by

Contact Us

About FAIRsharing