HUPO PSI Mass Spectrometry Controlled Vocabulary
Abbreviation: PSI-MS CV
Homepage http://www.psidev.info/groups/mass-spectrometry#controlled
Countries that developed this resource Germany , Sweden , Switzerland , United Kingdom , United States
Created in 2012
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: PSI-MS CV; HUPO PSI Mass Spectrometry Controlled Vocabulary; DOI: https://doi.org/10.25504/FAIRsharing.sxh2dp; Last edited: March 11, 2019, 12:25 p.m.; Last accessed: Jan 21 2021 3:41 p.m.
Publication for citation The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. Mayer G,Montecchi-Palazzi L,Ovelleiro D,Jones AR,Binz PA,Deutsch EW,Chambers M,Kallhardt M,Levander F,Shofstahl J,Orchard S,Vizcaino JA,Hermjakob H,Stephan C,Meyer HE,Eisenacher M; Database (Oxford) ; 2013; 10.1093/database/bat009;
Record updated: March 11, 2019, 12:25 p.m. by The FAIRsharing Team.
online documentation | http://www.psidev.info/groups/controlled ... |
online documentation | GitHub Repository |
Additional Information
Contact | psidev-ms-vocab@lists.sourceforge.net |
External Links
Bioportal | http://bioportal.bioontology.org/ontologies/MS |
OBO | http://obofoundry.org/ontology/ms.html |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Release
Download (OBO) | https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo |
Data Access
browse | https://www.ebi.ac.uk/ols/ontologies/ms |
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
Mayer G,Montecchi-Palazzi L,Ovelleiro D,Jones AR,Binz PA,Deutsch EW,Chambers M,Kallhardt M,Levander F,Shofstahl J,Orchard S,Vizcaino JA,Hermjakob H,Stephan C,Meyer HE,Eisenacher M
Database (Oxford) 2013
View in BioPortal.
View in OBO Foundry.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.
Golm Metabolome Database
The Golm Metabolome Database (GMD) provides gas chromatography (GC) mass spectrometry (MS) reference spectra, reference metabolite profiles and tools for one of the most widespread routine technologies applied to the large scale screening and discovery of novel metabolic biomarkers.
Japan Proteome Standard Repository
jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
This record is not implemented by any policy.
Record Maintainer
Funds
Luxembourg Centre for Systems Biomedicine (LCSB), Luxembourg, Luxembourg (Government body)
Protein Unit for Research in Europe (PURE) (Research institute)
ProteomeXchange (Consortium)
Swedish Research Council (Government body)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
The Wellcome Trust, UK (Charitable foundation)
Maintains
HUPO-PSI initiative; MS administrators (Consortium) Lead
Grant Number(s)
BB/H024654/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/I000909/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
EU FP7 grant number 260558 (ProteomeXchange)
P50 GM076547 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
R01 GM087221 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
WT085949MA (The Wellcome Trust, UK)