HUPO PSI Mass Spectrometry Controlled Vocabulary
Abbreviation: PSI-MS CV
How to cite this record FAIRsharing.org: PSI-MS CV; HUPO PSI Mass Spectrometry Controlled Vocabulary; DOI: https://doi.org/10.25504/FAIRsharing.sxh2dp; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Feb 18 2019 9:03 a.m.
Record updated: May 4, 2017, 2:11 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.sxh2dp' by 'The FAIRsharing Team' at 14:11, 04 May 2017 (approved): 'bioportal_abbreviation' has been modified: Before: MS After: MS
Edits to 'https://fairsharing.org/FAIRsharing.sxh2dp' by 'The FAIRsharing Team' at 14:37, 28 Feb 2017 (approved): 'homepage' has been modified: Before: http://www.psidev.info/groups/controlled-vocabularies After: http://www.psidev.info/groups/mass-spectrometry#controlled
|online documentation||http://www.psidev.info/groups/controlled ...|
|online documentation||https://github.com/HUPO-PSI/psi-ms-CV/bl ...|
No XSD schemas defined
Conditions of Use
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
Mayer G,Montecchi-Palazzi L,Ovelleiro D,Jones AR,Binz PA,Deutsch EW,Chambers M,Kallhardt M,Levander F,Shofstahl J,Orchard S,Vizcaino JA,Hermjakob H,Stephan C,Meyer HE,Eisenacher M
Database (Oxford) 2013
No guidelines defined
No semantic standards defined
Models and Formats
No identifier schema standards defined
No metrics standards defined
MetaboLights is a database is a collection of metabolite structures. This resource provides information on the compound origins,the biological roles, locations and concentrations, as well as experimental data from metabolic experiments. The tools and capabilities of this database is firmly routed in collaborative working worldwie with the metabolomics community such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).
Golm Metabolome Database
The Golm Metabolome Database (GMD) provides gas chromatography (GC) mass spectrometry (MS) reference spectra, reference metabolite profiles and tools for one of the most widespread routine technologies applied to the large scale screening and discovery of novel metabolic biomarkers.
Japan Proteome Standard Repository
jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
This record is not implemented by any policy.
Swedish Research Council (Government body)
Wellcome Trust, UK (Charitable foundation)
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
BB/H024654/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/I000909/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
EU FP7 grant number 260558 (ProteomeXchange)
P50 GM076547 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
R01 GM087221 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
WT085949MA (Wellcome Trust, UK)