The Encyclopedia of Proteome Dynamics
Abbreviation:EPD
General Information
The EPD has been created and is maintained by the Lamond group in the University of Dundee. It combines a polyglot persistent database and web-application that provides open access to integrated proteomics data for >30 000 proteins from published studies on human cells and model organisms. It is designed to provide a user-friendly interface, featuring graphical navigation with interactive visualizations that facilitate powerful data exploration in an intuitive manner. The EPD offers a flexible and scalable ecosystem to integrate proteomics data with genomics information, RNA expression and other related, large-scale datasets
How to cite this record
FAIRsharing.org: EPD; The Encyclopedia of Proteome Dynamics; DOI: https://doi.org/10.25504/FAIRsharing.sym4ne;
Last edited: Jan. 8, 2019, 1:25 p.m.; Last accessed: Jun 27 2019 10:58 a.m.
This record is maintained by
abrenes
Record added: Sept. 8, 2017, 4:55 p.m.
Record updated:
Sept. 11, 2017, 12:33 p.m. by The FAIRsharing Team.
Show edit history
Hide edit history
Edits to 'https://fairsharing.org/FAIRsharing.sym4ne' by 'The FAIRsharing Team' at 12:33, 11 Sep 2017 (approved):
'supportLinks' has been modified:
Before:
After:
peptracker@dundee.ac.uk
https://peptracker.com/epd/details/
https://peptracker.com/epd/about/
https://peptracker.com/epd/publications/
Added:
peptracker@dundee.ac.uk
https://peptracker.com/epd/details/
https://peptracker.com/epd/about/
https://peptracker.com/epd/publications/
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.sym4ne' by 'The FAIRsharing Team' at 12:22, 11 Sep 2017 (approved):
'domains' has been modified:
Before:
Data sharing|process|
Data visualization|None|http://purl.obolibrary.org/obo/OBI_0200111
Peptide identification|None|http://edamontology.org/data_0945
Peptide library||http://purl.obolibrary.org/obo/ERO_0000292
Post-translational protein modification (PTM)||http://purl.obolibrary.org/obo/GO_0043687
Proteomics|property|http://edamontology.org/topic_0121
After:
Data sharing|process|
Data visualization|None|http://purl.obolibrary.org/obo/OBI_0200111
Peptide identification|None|http://edamontology.org/data_0945
Peptide library||http://purl.obolibrary.org/obo/ERO_0000292
Post-translational protein modification (PTM)||http://purl.obolibrary.org/obo/GO_0043687
Proteomics|property|http://edamontology.org/topic_0121
Life Science|domain|
Added:
Life Science|domain|
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.sym4ne' by 'abrenes' at 16:59, 08 Sep 2017 (approved):
'description' has been modified:
Before: The EPD combines a polyglot persistent database and web-application that provides open access to integrated proteomics data for >30 000 proteins from published studies on human cells and model organisms. It is designed to provide a user-friendly interface, featuring graphical navigation with interactive visualizations that facilitate powerful data exploration in an intuitive manner. The EPD offers a flexible and scalable ecosystem to integrate proteomics data with genomics information, RNA expression and other related, large-scale datasets
After: The EPD has been created and is maintained by the Lamond group in the University of Dundee. It combines a polyglot persistent database and web-application that provides open access to integrated proteomics data for >30 000 proteins from published studies on human cells and model organisms. It is designed to provide a user-friendly interface, featuring graphical navigation with interactive visualizations that facilitate powerful data exploration in an intuitive manner. The EPD offers a flexible and scalable ecosystem to integrate proteomics data with genomics information, RNA expression and other related, large-scale datasets
Access / Retrieve Data
Conditions of Use
REST Web Services
Publications
The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics
Brenes A, Afzal V, Kent R, Lamond A.I
Nucleic Acids Research 2017
View Publication
Related Standards
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Related Databases
No related databases defined
Implementing Policies
This record is not implemented by any policy.
We need your help!
Do you have 5-10 minutes to help FAIRsharing prioritize future enhancements?
Then please fill out this short questionnaire to
prioritise the improvements that are of greatest importance to you.
Your views will help us choose which enhancements to provide first. Thank you very much!
