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The Yeast Metabolome DataBase
Abbreviation:YMDB
General Information
The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases.
How to cite this record
FAIRsharing.org: YMDB; The Yeast Metabolome DataBase; DOI: https://doi.org/10.25504/FAIRsharing.tawpg2;
Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jul 04 2020 11:09 p.m.
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Edits to 'https://fairsharing.org/FAIRsharing.tawpg2' by 'The FAIRsharing Team' at 10:08, 21 Nov 2018 (approved):
'domains' has been modified:
Before:
Cellular localization
Chemical descriptor
Chemical formula
Chemical structure
Concentration
DNA sequence data
Gene
Gene Ontology (GO) enrichment
Life Science
Mass spectrometry spectra
Metabolite
Metabolomics
Nuclear magnetic resonance (NMR) spectroscopy
Physical properties
Protein
After:
Amino acid sequence
Cellular localization
Chemical descriptor
Chemical formula
Chemical structure
Concentration
DNA sequence data
Gene
Gene Ontology (GO) enrichment
Life Science
Mass spectrometry spectra
Metabolite
Metabolomics
Nuclear magnetic resonance (NMR) spectroscopy
Physical properties
Protein
Added:
Amino acid sequence
Removed:
'miriam_id' has been modified:
Before: None
After:
Edits to 'https://fairsharing.org/FAIRsharing.tawpg2' by 'agbeltran' at 10:10, 22 Jul 2017 (approved):
'name' has been modified:
Before: YMDB
After: The Yeast Metabolome DataBase
Edits to 'https://fairsharing.org/FAIRsharing.tawpg2' by 'The FAIRsharing Team' at 15:47, 18 Aug 2016 (approved):
'description' has been modified:
Before: Yeast Metabolome Database
After: The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Bakers yeast and Brewers yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases.
Access / Retrieve Data
Conditions of Use
Data Versioning
| versioning by publication frequency
|
No link recorded |
Data Curation
| manual curation
|
No link recorded |
Data Access
Data Release
| daily release
|
No link recorded |
Publications
YMDB: the Yeast Metabolome Database.
Jewison T., Knox C., Neveu V., Djoumbou Y., Guo AC., Lee J., Liu P., Mandal R., Krishnamurthy R., Sinelnikov I., Wilson M., Wishart DS.,
Nucleic Acids Res. 2012
View Paper (PubMed)
View Publication
Related Standards
Reporting Guidelines
No guidelines defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Implementing Policies
This record is not implemented by any policy.
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