databases > DOI:10.25504/FAIRsharing.tf6kj8

ready Reactome - a curated knowledgebase of biological pathways

Abbreviation:Reactome

Recommended
General Information
The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 17 non-human species including mouse, rat, chicken, puffer fish, worm, fly, yeast, rice, and Arabidopsis.


In the following recommendations:




How to cite this record FAIRsharing.org: Reactome; Reactome - a curated knowledgebase of biological pathways; DOI: https://doi.org/10.25504/FAIRsharing.tf6kj8; Last edited: Jan. 10, 2019, 1:07 p.m.; Last accessed: Mar 25 2019 6:48 p.m.

Publication for citation  The Reactome Pathway Knowledgebase. Fabregat A,Jupe S,Matthews L,Sidiropoulos K,Gillespie M,Garapati P,Haw R,Jassal B,Korninger F,May B,Milacic M,Roca CD,Rothfels K,Sevilla C,Shamovsky V,Shorser S,Varusai T,Viteri G,Weiser J,Wu G,Stein L,Hermjakob H,D'Eustachio P; Nucleic Acids Res ; 2017; 10.1093/nar/gkx1132;


This record is maintained by reactome

Record updated: Jan. 10, 2019, 1:07 p.m. by The FAIRsharing Team.

Show edit history


Support

General

Additional Information

TeSS training resources 

Pathway visualization in the Reactome pathway database

Reactome






Publications

Reactome: a knowledgebase of biological pathways.

Joshi-Tope G., Gillespie M., Vastrik I., D'Eustachio P., Schmidt E., de Bono B., Jassal B., Gopinath GR., Wu GR., Matthews L., Lewis S., Birney E., Stein L.,
Nucleic Acids Res. 2005

View Paper (PubMed) View Publication

The Reactome Pathway Knowledgebase.

Fabregat A,Jupe S,Matthews L,Sidiropoulos K,Gillespie M,Garapati P,Haw R,Jassal B,Korninger F,May B,Milacic M,Roca CD,Rothfels K,Sevilla C,Shamovsky V,Shorser S,Varusai T,Viteri G,Weiser J,Wu G,Stein L,Hermjakob H,D'Eustachio P
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined