Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'reactome' at 17:37, 24 Jun 2020 (approved):
'description' has been modified:
Before: The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 15 non-human species including mouse, rat, chicken, puffer fish, worm, fly, and yeast.
After: The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 15 non-human species including mouse, rat, chicken, zebrafish, worm, fly, and yeast.
Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'reactome' at 16:34, 24 Jun 2020 (approved):
'yearOfCreation' has been modified:
Before: 2002
After: 2004
Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'reactome' at 16:32, 24 Jun 2020 (approved):
'yearOfCreation' has been modified:
Before: 2003
After: 2002
'taxonomies' has been modified:
Before:
All
After:
Bos taurus
Caenorhabditis elegans
Canis familiaris
Danio rerio
Dictyostelium discoideum
Drosophila melanogaster
Gallus gallus
Homo sapiens
Mus musculus
Mycobacterium tuberculosis
Plasmodium falciparum
Rattus norvegicus
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Sus scrofa
Xenopus tropicalis
Added:
Bos taurus
Caenorhabditis elegans
Canis familiaris
Danio rerio
Dictyostelium discoideum
Drosophila melanogaster
Gallus gallus
Homo sapiens
Mus musculus
Mycobacterium tuberculosis
Plasmodium falciparum
Rattus norvegicus
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Sus scrofa
Xenopus tropicalis
Removed:
All
'homepage' has been modified:
Before: http://www.reactome.org
After: https://reactome.org
'description' has been modified:
Before: The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 17 non-human species including mouse, rat, chicken, puffer fish, worm, fly, yeast, rice, and Arabidopsis.
After: The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 15 non-human species including mouse, rat, chicken, puffer fish, worm, fly, and yeast.
Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'The FAIRsharing Team' at 14:38, 21 Apr 2020 (approved):
'user_defined_tags' has been modified:
Before:
After:
COVID-19
Added:
COVID-19
Removed:
'onto_disciplines' has been modified:
Before:
Life Science
After:
Epidemiology
Life Science
Virology
Added:
Epidemiology
Virology
Removed:
'supportLinks' has been modified:
Before:
online documentation|https://reactome.org/documentation
online documentation|https://reactome.org/content/schema/DatabaseObject
online documentation|https://reactome.org/documentation/inferred-events
tess training|https://tess.elixir-europe.org/materials/pathway-visualization-in-the-reactome-pathway-database
tess training|https://tess.elixir-europe.org/materials/reactome
training|https://reactome.org/community/training
twitter|@reactome
After:
TeSS training|https://tess.elixir-europe.org/materials/pathway-visualization-in-the-reactome-pathway-database
TeSS training|https://tess.elixir-europe.org/materials/reactome
online documentation|https://reactome.org/documentation/inferred-events
online documentation|https://reactome.org/documentation
online documentation|https://reactome.org/content/schema/DatabaseObject
training|https://reactome.org/community/training
twitter|@reactome
Added:
TeSS training|https://tess.elixir-europe.org/materials/pathway-visualization-in-the-reactome-pathway-database
TeSS training|https://tess.elixir-europe.org/materials/reactome
Removed:
tess training|https://tess.elixir-europe.org/materials/pathway-visualization-in-the-reactome-pathway-database
tess training|https://tess.elixir-europe.org/materials/reactome
Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'The FAIRsharing Team' at 13:07, 10 Jan 2019 (approved):
'organizations' has been modified:
Before:
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
After:
New York University Langone Medical Center (NYULMC), New York, USA|https://nyulangone.org/|Maintains
Ontario Institute For Cancer Research, Toronto, ON, Canada|http://oicr.on.ca/|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Oregon Health & Science University, USA|http://www.ohsu.edu/xd/education/library/about/departments/ontology-development.cfm|Maintains
Added:
New York University Langone Medical Center (NYULMC), New York, USA|https://nyulangone.org/|Maintains
Ontario Institute For Cancer Research, Toronto, ON, Canada|http://oicr.on.ca/|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Oregon Health & Science University, USA|http://www.ohsu.edu/xd/education/library/about/departments/ontology-development.cfm|Maintains
Removed:
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
'supportLinks' has been modified:
Before:
online documentation|http://wiki.reactome.org/index.php/Usersguide
twitter|@reactome
After:
online documentation|https://reactome.org/documentation
online documentation|https://reactome.org/content/schema/DatabaseObject
online documentation|https://reactome.org/documentation/inferred-events
tess training|https://tess.elixir-europe.org/materials/pathway-visualization-in-the-reactome-pathway-database
tess training|https://tess.elixir-europe.org/materials/reactome
training|https://reactome.org/community/training
twitter|@reactome
Added:
online documentation|https://reactome.org/documentation
online documentation|https://reactome.org/content/schema/DatabaseObject
online documentation|https://reactome.org/documentation/inferred-events
tess training|https://tess.elixir-europe.org/materials/pathway-visualization-in-the-reactome-pathway-database
tess training|https://tess.elixir-europe.org/materials/reactome
training|https://reactome.org/community/training
Removed:
online documentation|http://wiki.reactome.org/index.php/Usersguide
'description' has been modified:
Before: The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.
After: The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 17 non-human species including mouse, rat, chicken, puffer fish, worm, fly, yeast, rice, and Arabidopsis.
'licences' has been modified:
Before:
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
After:
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Software
Added:
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Software
Removed:
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
'yearOfCreation' has been modified:
Before: 2004
After: 2003
'onto_domains' has been modified:
Before:
Reaction data
curated information
pathway
After:
Drug Interaction
Protein interactions
Reaction data
biological regulation
curated information
disease
genetic interaction
molecular interaction
pathway
signaling
Added:
Drug Interaction
Protein interactions
biological regulation
disease
genetic interaction
molecular interaction
signaling
Removed:
'dataProcesses' has been modified:
Before:
Download
browse
search
After:
Download
Browse
Advanced Search
Browse DOIs
Added:
Browse
Advanced Search
Browse DOIs
Removed:
browse
search
'publications' has been modified:
Before:
Reactome: a knowledgebase of biological pathways.|Joshi-Tope G., Gillespie M., Vastrik I., D'Eustachio P., Schmidt E., de Bono B., Jassal B., Gopinath GR., Wu GR., Matthews L., Lewis S., Birney E., Stein L., |Nucleic Acids Res.|2005
After:
Reactome: a knowledgebase of biological pathways.|Joshi-Tope G., Gillespie M., Vastrik I., D'Eustachio P., Schmidt E., de Bono B., Jassal B., Gopinath GR., Wu GR., Matthews L., Lewis S., Birney E., Stein L., |Nucleic Acids Res.|2005
The Reactome Pathway Knowledgebase.|Fabregat A,Jupe S,Matthews L,Sidiropoulos K,Gillespie M,Garapati P,Haw R,Jassal B,Korninger F,May B,Milacic M,Roca CD,Rothfels K,Sevilla C,Shamovsky V,Shorser S,Varusai T,Viteri G,Weiser J,Wu G,Stein L,Hermjakob H,D'Eustachio P|Nucleic Acids Res|2017
Added:
The Reactome Pathway Knowledgebase.|Fabregat A,Jupe S,Matthews L,Sidiropoulos K,Gillespie M,Garapati P,Haw R,Jassal B,Korninger F,May B,Milacic M,Roca CD,Rothfels K,Sevilla C,Shamovsky V,Shorser S,Varusai T,Viteri G,Weiser J,Wu G,Stein L,Hermjakob H,D'Eustachio P|Nucleic Acids Res|2017
Removed:
'accessPoints' has been modified:
Before:
After:
REST|http://reactome.org/AnalysisService/|Pathway Analysis Service API
REST|https://reactome.org/ContentService/|Content Service API
Added:
REST|http://reactome.org/AnalysisService/|Pathway Analysis Service API
REST|https://reactome.org/ContentService/|Content Service API
Removed:
'tools' has been modified:
Before:
analyze||http://www.reactome.org/PathwayBrowser/#TOOL=AT
Pathway Analysis Service API||http://reactome.org/AnalysisService/
After:
Analyze with the Pathway Browser||http://www.reactome.org/PathwayBrowser/#TOOL=AT
ReactomeFIVIz||https://reactome.org/tools/reactome-fiviz
Added:
Analyze with the Pathway Browser||http://www.reactome.org/PathwayBrowser/#TOOL=AT
ReactomeFIVIz||https://reactome.org/tools/reactome-fiviz
Removed:
analyze||http://www.reactome.org/PathwayBrowser/#TOOL=AT
Pathway Analysis Service API||http://reactome.org/AnalysisService/
Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'The FAIRsharing Team' at 19:39, 03 Feb 2018 (approved):
'related_standards' has been modified:
Before:
bsg-s000038|Biological Pathway eXchange
bsg-s000052|Systems Biology Markup Language
bsg-s000092|Systems Biology Graphical Notation
bsg-s000039|Chemical Entities of Biological Interest
bsg-s000120|Molecular Interaction Tabular
bsg-s000089|Gene Ontology
After:
bsg-s000038|Biological Pathway eXchange
bsg-s000052|Systems Biology Markup Language
bsg-s000092|Systems Biology Graphical Notation
bsg-s000039|Chemical Entities of Biological Interest
bsg-s000120|Molecular Interaction Tabular
bsg-s000089|Gene Ontology
bsg-s000593|Schema.org
Added:
bsg-s000593|Schema.org
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.tf6kj8' by 'reactome' at 03:31, 21 Mar 2017 (approved):
'contactName' has been modified:
Before:
After:
Reactome Helpdesk
Countries have changed:
Previous values:
European Union
United States of America
New values:
Canada
United States of America
United Kingdom
Related standards have changed:
Previous values:
bsg-s000039:Chemical Entities of Biological Interest
bsg-s000089:Gene Ontology
bsg-s000120:Molecular Interaction Tabular
bsg-s000052:Systems Biology Markup Language
New values:
bsg-s000039:Chemical Entities of Biological Interest
bsg-s000089:Gene Ontology
bsg-s000038:Biological Pathway eXchange
bsg-s000120:Molecular Interaction Tabular
bsg-s000052:Systems Biology Markup Language
bsg-s000092:Systems Biology Graphical Notation
Related databases have changed:
Previous values:
biodbcore-000095: Rhea
biodbcore-000155: WikiPathways
biodbcore-000230: BindingDB database of measured binding affinities
biodbcore-000420: Pathway Commons
biodbcore-000495: Biological General Repository for Interaction Datasets
biodbcore-000541: Type 1 Diabetes Database
biodbcore-000755: MetaNetX
biodbcore-000848: Open Targets
New values:
biodbcore-000095: Rhea
biodbcore-000155: WikiPathways
biodbcore-000420: Pathway Commons
biodbcore-000755: MetaNetX
biodbcore-000848: Open Targets
biodbcore-000663: Kyoto Encyclopedia of Genes and Genomes
biodbcore-000523: Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
biodbcore-000054: IntAct molecular interaction database
Added:
Removed: