INSD sequence record XML
Abbreviation: INSDSeq
Homepage http://www.insdc.org/documents/xml-status
Countries that developed this resource China , France , Greece , Japan , United Kingdom , United States
Created in 1988
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: INSDSeq; INSD sequence record XML; DOI: https://doi.org/10.25504/FAIRsharing.tn873z; Last edited: Jan. 15, 2019, 1:59 p.m.; Last accessed: Mar 07 2021 2:51 p.m.
Record updated: Jan. 15, 2019, 1:58 p.m. by The FAIRsharing Team.
online documentation | INSDC Documents |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Access
Download INSDSeq XML v1.5 DTD (in DOCX file) | http://www.insdc.org/sites/insdc.org/files/documents/INSD_v1.5.dtd.doc ... |
Reminder to deposit DNA sequences.
Blaxter M,Danchin A,Savakis B,Fukami-Kobayashi K,Kurokawa K,Sugano S,Roberts RJ,Salzberg SL,Wu CI
Science 2016
Databases: Reminder to deposit DNA sequences.
Salzberg SL
Nature 2016
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
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DNA Data Bank of Japan
An annotated collection of all publicly available nucleotide and protein sequences. DDBJ collects sequence data mainly from Japanese researchers, as well as researchers in any other countries. DDBJ is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.
European Nucleotide Archive
The European Nucleotide Archive (ENA) is a globally comprehensive data resource for nucleotide sequence, spanning raw data, alignments and assemblies, functional and taxonomic annotation and rich contextual data relating to sequenced samples and experimental design. Serving both as the database of record for the output of the world's sequencing activity and as a platform for the management, sharing and publication of sequence data, the ENA provides a portfolio of services for submission, data management, search and retrieval across web and programmatic interfaces. The ENA is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.
Bacterial Diversity Metadatabase
BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity. BacDive contains entries for over 63,000 strains and provides information on their taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DDBJ Sequence Read Archive
DDBJ Sequence Read Archive (DRA) is an archive database for output data generated by next-generation sequencing machines including Roche 454 GS System®, Illumina Genome Analyzer®, Applied Biosystems SOLiD® System, and others. DRA is a member of the International Nucleotide Sequence Database Collaboration (INSDC) and archiving the data in a close collaboration with NCBI Sequence Read Archive (SRA) and EBI Sequence Read Archive (ERA).
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Funds
European Commission under FP7 Grant Agreement (Government body)
Maintains
National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)
National Institute of Genetics (NIG), Shizuoka, Japan (Government body)
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute)