standards > model/format > DOI:10.25504/FAIRsharing.tn873z
Did we miss something? Our COVID-19 Collection is growing, but not yet complete. Tell us what's missing. Email contact@fairsharing.org or add missing resources to our spreadsheet


ready INSD sequence record XML

Abbreviation: INSDSeq


General Information
The International Nucleotide Sequence Database Collaboration (INSDC) is a long-standing foundational initiative that operates between DDBJ, EMBL-EBI and NCBI. INSDC covers the spectrum of data raw reads, though alignments and assemblies to functional annotation, enriched with contextual information relating to samples and experimental configurations. The INSDSeq is the official supported XML format of the International Nucleotide Sequence Database Collaboration (INSDC). The current production version of the XML is INSDSeq v1.5.

Homepage http://www.insdc.org/documents/xml-status

Countries that developed this resource China , France , Greece , Japan , United Kingdom , United States

Created in 1988

Taxonomic range

Subjects 




How to cite this record FAIRsharing.org: INSDSeq; INSD sequence record XML; DOI: https://doi.org/10.25504/FAIRsharing.tn873z; Last edited: Jan. 15, 2019, 1:59 p.m.; Last accessed: Sep 22 2020 6:06 a.m.


Record updated: Jan. 15, 2019, 1:58 p.m. by The FAIRsharing Team.

Show edit history



Support

General


Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data


Publications

Reminder to deposit DNA sequences.

Blaxter M,Danchin A,Savakis B,Fukami-Kobayashi K,Kurokawa K,Sugano S,Roberts RJ,Salzberg SL,Wu CI
Science 2016

View Paper (PubMed) View Publication

Databases: Reminder to deposit DNA sequences.

Salzberg SL
Nature 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (5)
GenBank
GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. GenBank growth statistics for both the traditional GenBank divisions and the WGS division are available from each release. GenBank is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.

DNA Data Bank of Japan
Annotated collection of all publicly available nucleotide and protein sequences. DDBJ collects sequence data mainly from Japanese researchers, as well as researchers in any other countries. DDBJ is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.

European Nucleotide Archive
The European Nucleotide Archive (ENA) is a globally comprehensive data resource for nucleotide sequence, spanning raw data, alignments and assemblies, functional and taxonomic annotation and rich contextual data relating to sequenced samples and experimental design. Serving both as the database of record for the output of the world's sequencing activity and as a platform for the management, sharing and publication of sequence data, the ENA provides a portfolio of services for submission, data management, search and retrieval across web and programmatic interfaces. The ENA is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.

Bacterial Diversity Metadatabase
BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity. BacDive contains entries for over 63,000 strains and provides information on their taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.

DDBJ Sequence Read Archive
DDBJ Sequence Read Archive (DRA) is an archive database for output data generated by next-generation sequencing machines including Roche 454 GS System®, Illumina Genome Analyzer®, Applied Biosystems SOLiD® System, and others. DRA is a member of the International Nucleotide Sequence Database Collaboration (INSDC) and archiving the data in a close collaboration with NCBI Sequence Read Archive (SRA) and EBI Sequence Read Archive (ERA).

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains