Encyclopedia of DNA Elements at UCSC
Abbreviation:ENCODE
Homepage http://genome.ucsc.edu/ENCODE/
Developed in United States
Created in 2007
Taxonomic range
Knowledge Domains BETA
Subjects BETA
User-defined Tags
How to cite this record FAIRsharing.org: ENCODE; Encyclopedia of DNA Elements at UCSC; DOI: https://doi.org/10.25504/FAIRsharing.v0hbjs; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 22 2019 6:12 a.m.
Record updated: April 10, 2018, 9:39 a.m. by The FAIRsharing Team.
| FAQ | http://genome.ucsc.edu/ENCODE/FAQ/index. ... |
| Mailing List | None |
| training | http://www.openhelix.com/ENCODE2/ |
| wikipedia | https://en.wikipedia.org/wiki/ENCODE |
Additional Information
| Contact | Brian Lee |
Conditions of Use
Applies to: Data use- Data has usage restrictions for 9 months after public availability
Data Versioning
| versioning by genome assembly | No link recorded |
| versioning by individual annotation | No link recorded |
| access to historical files possible | No link recorded |
Data Release
| continuous release (live database) | No link recorded |
Data Curation
| manual curation | No link recorded |
| automated curation | No link recorded |
Data Access
| web interface, PNG/PDF/PS visualizations of sequences and annotations by genomic position | No link recorded |
| text, tabular and file downloads in a variety of formats | No link recorded |
| direct MySQL access through public MySQL server with anonymous login | No link recorded |
| UCSC Genome Browser | http://genome.ucsc.edu/ |
ENCODE data in the UCSC Genome Browser: year 5 update
Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ
Nucleic Acids Research 2013
ENCODE whole-genome data in the UCSC Genome Browser: update 2012.
Rosenbloom KR, Dreszer TR, Long JC, Malladi VS, Sloan CA, Raney BJ, Cline MS, Karolchik D, Barber GP, Clawson H, Diekhans M, Fujita PA, Goldman M, Gravell RC, Harte RA, Hinrichs AS, Kirkup VM, Kuhn RM, Learned K, Maddren M, Meyer LR, Pohl A, Rhead B, Wong MC, Zweig AS, Haussler D, Kent WJ
Nucleic Acids Research 2012
ENCODE whole-genome data in the UCSC genome browser (2011 update)
Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ
Nucleic Acids Research 2011
ENCODE whole-genome data in the UCSC Genome Browser
Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ
Nucleic Acids Research 2010
The ENCODE project at UC Santa Cruz
Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs, AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS, The ENCODE Project Consortium, Haussler D, Kent WJ
Nucleic Acids Research 2007
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
Metrics
No metrics standards defined
This record is not implemented by any policy.
Record Maintainer
This record is maintained by dkarolchik
Funds
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
Maintains
Grant Number(s)
3P41HG002371-10S1 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
3U41HG004568-03S1 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
5P41HG002371-10 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
5U41HG004568-04 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
