Edits to 'https://fairsharing.org/FAIRsharing.va62ke' by 'The FAIRsharing Team' at 21:10, 07 Feb 2021 (approved):
'publications' has been modified:
Before:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models|King ZA,Lu J,Drger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|Schellenberger J,Park JO,Conrad TM,Palsson BO|BMC Bioinformatics|2010
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.|King ZA,Lu J,Drager A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
After:
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|Schellenberger J,Park JO,Conrad TM,Palsson BO|BMC Bioinformatics|2010
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.|King ZA,Lu J,Drager A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
Added:
Removed:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models|King ZA,Lu J,Drger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
Edits to 'https://fairsharing.org/FAIRsharing.va62ke' by 'draeger' at 20:50, 07 Feb 2021 (approved):
'publications' has been modified:
Before:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models|King ZA,Lu J,Drger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|Schellenberger J,Park JO,Conrad TM,Palsson BO|BMC Bioinformatics|2010
After:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models|King ZA,Lu J,Drger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|Schellenberger J,Park JO,Conrad TM,Palsson BO|BMC Bioinformatics|2010
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.|King ZA,Lu J,Drager A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
Added:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.|King ZA,Lu J,Drager A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.va62ke' by 'draeger' at 20:50, 07 Feb 2021 (approved):
'publications' has been modified:
Before:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models|King ZA,Lu J,Drger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|Schellenberger J,Park JO,Conrad TM,Palsson BO|BMC Bioinformatics|2010
After:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models|King ZA,Lu J,Drger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions|Schellenberger J,Park JO,Conrad TM,Palsson BO|BMC Bioinformatics|2010
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.|King ZA,Lu J,Drager A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
Added:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.|King ZA,Lu J,Drager A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE|Nucleic Acids Res|2015
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.va62ke' by 'The FAIRsharing Team' at 15:10, 04 Feb 2021 (approved):
'organizations' has been modified:
Before:
U.S. Department of Energy|http://genomicscience.energy.gov/datasharing/|Funds
European Commission|http://ec.europa.eu/|Funds
Novo Nordisk Foundation, Denmark|http://www.novonordiskfonden.dk/en|Funds
University of California, San Diego, CA, USA|http://www.ucsd.edu|Maintains
U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
After:
U.S. Department of Energy|http://genomicscience.energy.gov/datasharing/|Funds
European Commission|http://ec.europa.eu/|Funds
Novo Nordisk Foundation, Denmark|http://www.novonordiskfonden.dk/en|Funds
U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
University of California, San Diego, CA, USA|http://www.ucsd.edu|Maintains
Systems Biology Research Group, University of California San Diego, USA|https://systemsbiology.ucsd.edu/|Maintains
Added:
Systems Biology Research Group, University of California San Diego, USA|https://systemsbiology.ucsd.edu/|Maintains
Removed:
'supportLinks' has been modified:
Before:
schema file|https://github.com/SBRG/bigg_models
twitter|@ucsd_sbrg
After:
online documentation|https://github.com/sbrg/bigg_models
twitter|@ucsd_sbrg
Added:
online documentation|https://github.com/sbrg/bigg_models
Removed:
schema file|https://github.com/SBRG/bigg_models
'description' has been modified:
Before: BiGG is a freely compendium of published genome-scale metabolic networks, combined into a single database. NCBI genome annotations are used to map genes, and metabolites are linked to many external databases such as KEGG, PubChem as well as others..
After: BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions. BiGG Models integrates more than 70 published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs.
'licences' has been modified:
Before:
MIT Licence|https://opensource.org/licenses/mit|Data
After:
BIGG Licence|http://bigg.ucsd.edu/license#license|Data
Added:
BIGG Licence|http://bigg.ucsd.edu/license#license|Data
Removed:
MIT Licence|https://opensource.org/licenses/mit|Data
'onto_disciplines' has been modified:
Before:
Life Science
After:
Life Science
Metabolomics
Added:
Metabolomics
Removed:
'onto_domains' has been modified:
Before:
Pathway or network prediction
After:
Prediction and recognition
network model
Added:
Prediction and recognition
network model
Removed:
Pathway or network prediction
'user_defined_tags' has been modified:
Before:
After:
Genome Scale Metabolic Model
Genome-scale network
Added:
Genome Scale Metabolic Model
Genome-scale network
Removed:
'miriam_id' has been modified:
Before: None
After:
'dataProcesses' has been modified:
Before:
Manually, data curation,
After:
Download, data release, http://bigg.ucsd.edu/data_access
Advanced Search, data access, http://bigg.ucsd.edu/advanced_search
Added:
Download, data release, http://bigg.ucsd.edu/data_access
Advanced Search, data access, http://bigg.ucsd.edu/advanced_search
Removed:
Manually, data curation,
'accessPoints' has been modified:
Before:
REST|http://bigg.ucsd.edu/web_api|http://bigg.ucsd.edu/api/v2/
After:
REST|http://bigg.ucsd.edu/data_access|http://bigg.ucsd.edu/api/v2/
Added:
REST|http://bigg.ucsd.edu/data_access|http://bigg.ucsd.edu/api/v2/
Removed:
REST|http://bigg.ucsd.edu/web_api|http://bigg.ucsd.edu/api/v2/
Edits to 'https://fairsharing.org/FAIRsharing.va62ke' by 'The FAIRsharing Team' at 18:06, 03 Sep 2016 (approved):
'description' has been modified:
Before: BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.
After: BiGG is a freely compendium of published genome-scale metabolic networks, combined into a single database. NCBI genome annotations are used to map genes, and metabolites are linked to many external databases such as KEGG, PubChem as well as others.. Related databases have changed: Previous values: biodbcore-000306: A repository of mathematical models of biological and biomedical systems biodbcore-000740: JWS Online biodbcore-000755: MetaNetX New values: biodbcore-000306: A repository of mathematical models of biological and biomedical systems biodbcore-000740: JWS Online biodbcore-000755: MetaNetX biodbcore-000455: PubChem biodbcore-000663: Kyoto Encyclopedia of Genes and Genomes