Genomic Feature and Variation Ontology

Abbreviation: GFVO

General Information

The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). The GFVO specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations. NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed.

Homepage https://github.com/BioInterchange/Ontologies

Countries that developed this resource Norway , Saudi Arabia , United States

Created in 2015

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Feb. 4, 2020, 10:15 a.m.; Last accessed: Apr 17 2021 5:26 a.m.

Publication for citation GFVO: the Genomic Feature and Variation Ontology. Baran J,Durgahee BS,Eilbeck K,Antezana E,Hoehndorf R,Dumontier M; PeerJ ; 2015; 10.7717/peerj.933;

Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: Feb. 4, 2020, 10:14 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.vbejb6' by 'The FAIRsharing Team' at 10:14, 04 Feb 2020 (approved):

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			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
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			online documentation|http://agroportal.lirmm.fr/ontologies/GFVO
			online documentation|https://www.codamono.com/biointerchange/documentation/
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			email|robert.hoehndorf@kaust.edu.sa
			forum|https://github.com/BioInterchange/Ontologies/issues
			online documentation|https://www.codamono.com/biointerchange/documentation/
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			email|robert.hoehndorf@kaust.edu.sa
			forum|https://github.com/BioInterchange/Ontologies/issues
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			online documentation|http://agroportal.lirmm.fr/ontologies/GFVO

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			Genomics
			Life Science
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			Life Science

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			AgroPortal: Browse / Download
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Edits to 'https://fairsharing.org/FAIRsharing.vbejb6' by 'The FAIRsharing Team' at 10:33, 17 Jan 2018 (approved):

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		Before: http://www.biointerchange.org/ontologies.html
		After: https://github.com/BioInterchange/Ontologies

In Collections

RDA Covid-19 WG Resources

Support

General

support email	Robert Hoehndorf
forum	GitHub Issue Tracker
online documentation	Usage within BioInterchange

Additional Information

Contact

Joachim Baran

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/GFVO

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

Data Release

Download (OWL)

https://raw.github.com/BioInterchange/Ontologies/master/gfvo.xml

Data Access

AgroPortal: Browse / Download

http://agroportal.lirmm.fr/ontologies/GFVO

Publications

GFVO: the Genomic Feature and Variation Ontology.

Baran J,Durgahee BS,Eilbeck K,Antezana E,Hoehndorf R,Dumontier M
PeerJ 2015

View Paper (PubMed) View Publication

GFVO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (0)

No Related Databases

Implementing Policies

This record is not implemented by any policy.

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Genomic Feature and Variation Ontology

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