standards > terminology artifact > DOI:10.25504/FAIRsharing.vbejb6

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ready Genomic Feature and Variation Ontology

Abbreviation: GFVO


General Information
The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). The GFVO specifically addresses genomic data as it is regularly shared using the GFF3 (incl. FASTA), GTF, GVF and VCF file formats. GFVO simplifies data integration and enables linking of genomic annotations across datasets through common semantics of genomic types and relations. NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed.

Homepage https://github.com/BioInterchange/Ontologies

Developed in Norway , Saudi Arabia , United States

Created in 2015

Taxonomic range




How to cite this record FAIRsharing.org: GFVO; Genomic Feature and Variation Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vbejb6; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Mar 26 2019 3:48 a.m.


Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: May 16, 2018, 12:02 p.m. by The FAIRsharing Team.

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Support

General

online documentation GFVO in AgroPortal
online documentation Usage within BioInterchange

Additional Information

Contact Joachim Baran

External Links

Bioportal http://bioportal.bioontology.org/ontologies/GFVO

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

GFVO: the Genomic Feature and Variation Ontology.

Baran J,Durgahee BS,Eilbeck K,Antezana E,Hoehndorf R,Dumontier M
PeerJ 2015

View Paper (PubMed) View Publication

GFVO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

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Implementing Databases (0)

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