standards > model/format > DOI:10.25504/FAIRsharing.ve0710
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ready Molecular Interaction Tabular

Abbreviation: MITAB


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General Information
The MITAB27 format is an extension of the PSI-MI 2.5 (1) and 2.6 standard. It has been derived from the tabular format provided by BioGrid. MITAB27 only describes binary interactions, with one pair of interactors per row.

Homepage http://psicquic.github.io/MITAB27Format.html

Countries that developed this resource China , European Union , Japan , United States

Created in 2005

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How to cite this record FAIRsharing.org: MITAB; Molecular Interaction Tabular; DOI: https://doi.org/10.25504/FAIRsharing.ve0710; Last edited: July 2, 2019, 1:30 p.m.; Last accessed: Oct 22 2021 6:02 p.m.


This record is maintained by orchard  and HUPO PSI  (HUPOPSI)

Record updated: July 2, 2019, 1:29 p.m. by The FAIRsharing Team.

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Publications

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.

Kerrien S,Orchard S,Montecchi-Palazzi L,Aranda B,Quinn AF,Vinod N,Bader GD,Xenarios I,Wojcik J,Sherman D,Tyers M,Salama JJ,Moore S,Ceol A,Chatr-Aryamontri A,Oesterheld M,Stumpflen V,Salwinski L,Nerothin J,Cerami E,Cusick ME,Vidal M,Gilson M,Armstrong J,Woollard P,Hogue C,Eisenberg D,Cesareni G,Apweiler R,Hermjakob H
BMC Biol 2007

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Related Databases (19)
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Termini-Oriented Protein Function INferred Database
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Automatic molecular interaction predictions
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STRING
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Extracellular Matrix Interaction Database
MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondins) when appropriate. Multimers are treated as permanent complexes, referencing EBI identifiers when possible. Human interactions were inferred from non-human homologous interactions when available.

VirHostNet 2.0
VirHostNet 2.0 integrates an extensive and original literature-curated dataset of virus/virus and virus/host protein-protein interactions complemented with publicly available data.

Human Protein Reference Database
The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.

Microbial Protein Interaction Database
The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.

Biological General Repository for Interaction Datasets
The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans. BioGRID currently holds over 1,740,000 interactions curated from both high-throughput datasets and individual focused studies, as derived from over 70,000+ publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. All data are freely provided via our search index and available for download in many standardized formats.

InnateDB
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Interaction Reference Index Web Interface
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Database of Interacting Proteins
The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data stored within the DIP database were curated, both manually by expert curators and automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the core DIP data.

Interologous Interaction Database
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Host Pathogen Interaction Database
HPIDB 3.0 is a resource that helps annotate, predict and display host-pathogen interactions (HPI). HPI that underpin infectious diseases are critical for developing novel intervention strategies. HPIDB is a host-pathogen protein-protein interaction (PPI) database, which serves as a unified resource for host-pathogen interactions. HPIDB integrates experimental PPIs from several public databases into a single, non-redundant web accessible resource.

Human Protein-Protein Interaction rEference
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Alliance of Genome Resources
The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease.

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Credit

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Funds

Maintains

Grant Number(s)

  • 021902 (RII3) (European Commission)

  • 1 R01 GM071909 (ELIXIR Italy)

  • DE-FC03-02ER63421 (U.S. Department of Energy)

  • GM070064 (ELIXIR Italy)