Neuroscience Information Framework Standard Ontology
Abbreviation: NIFSTD
Homepage http://ontology.neuinfo.org
Countries that developed this resource United States , Worldwide
Created in 2008
Taxonomic range
Subjects
How to cite this record FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Apr 23 2021 1:07 a.m.
Record updated: Nov. 25, 2019, 5:50 p.m. by The FAIRsharing Team.
Additional Information
| Contact | Tom Gillespie ORCID |
External Links
| Bioportal | http://bioportal.bioontology.org/ontologies/NIFSTD |
| pyontutils | https://github.com/tgbugs/pyontutils |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Release
| development, release, and versioning processes | https://github.com/SciCrunch/NIF-Ontology/blob/master/docs/processes.m ... |
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.
Bug WJ,Ascoli GA,Grethe JS,Gupta A,Fennema-Notestine C,Laird AR,Larson SD,Rubin D,Shepherd GM,Turner JA,Martone ME
Neuroinformatics 2008
View in BioPortal.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
- Chemical Entities of Biological Interest
- Cell Ontology
- Sequence Ontology
- Ontology for Biomedical Investigations
- Biomedical Resource Ontology
- Foundational Model of Anatomy
- Subcellular Anatomy Ontology
- Phenotypic QualiTy Ontology
- Gene Ontology
- Basic Formal Ontology
- Medical Subject Headings
- Online Mendelian Inheritance in Man Ontology
- InterLex
- Biomedical Informatics Research Network Project Lexicon
- Cognitive Paradigm Ontology
- UMLS Semantic Network
- Dublin Core Metadata Initiative (DCMI) Metadata Terms
- OBO Relations Ontology
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
The information in the database is presented at two levels: the initial view or landing pages for each target family provide expert-curated overviews of the key properties and selective ligands and tool compounds available. For selected targets more detailed introductory chapters for each family are available along with curated information on the pharmacological, physiological, structural, genetic and pathophysiogical properties of each target. Recent extensions to the database provide specific portals for accessing data on immunopharmacology (IUPHAR Guide to IMMUNOPHARMACOLOGY; www.guidetoimmunopharmacology.org), and on malaria pharmacology (IUPHAR/MMV Guide to MALARIA PHARMACOLOGY; www.guidetomalariapharmacology.org). The database is enhanced with hyperlinks to additional information in other databases including Ensembl, UniProt, PubChem and ChEMBL, as well as curated chemical information and literature citations in PubMed.
NeuroMorpho.Org
NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated with peer-reviewed publications. The goal of NeuroMorpho.Org is to provide dense coverage of available reconstruction data for the neuroscience community.
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. Data includes gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.
Neuroimaging Informatics Tools and Resources Collaboratory Resources Registry
Neuroimaging Informatics Tools and Resources Collaboratory Resources Registry (NITRC-R) describes software tools and resources, vocabularies, test data, and databases. It is intended to extend the impact and longevity of previously funded neuroimaging informatics contributions. NITRC-R gives researchers access to tools and resources, categorization and organization of existing tools and resources, facilitation of interactions between researchers and developers, and promotion of best practices through enhanced documentation and tutorials. NITRC’s scientific focus includes: MR, PET/SPECT, CT, EEG/MEG, optical imaging, clinical neuroimaging, computational neuroscience, and imaging genomics software tools, data, and computational resources.
Neuroscience Information Framework
NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web.
Cell Centered Database
The Cell Centered Database (CCDB) is a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging.
Integrated Taxonomic Information System
The Integrated Taxonomic Information System (ITIS) provides taxonomic information on plants, animals, fungi, and microbes of North America and the world. The goal is to create an easily accessible database with reliable information on species names and their hierarchical classification. The database will be reviewed periodically to ensure high quality with valid classifications, revisions, and additions of newly described species. The ITIS includes documented taxonomic information of flora and fauna from both aquatic and terrestrial habitats.
GBIF France IPT - GBIF France
GBIF France aims to collect all primary biodiversity data hosted in France, regardless of whether they concern the biodiversity of French territory or the rest of the world. GBIF France also supports additional countries' nodes with the hosting of their IPTs.
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