Ontology for Genetic Interval

Abbreviation: OGI

General Information

Using BFO (Basic Formal Ontology) as its upper-level ontology, the Ontology for Genetic Interval (OGI) represents gene as an entity with its 3D shape, topography, and primary DNA sequence as the foundation for its 3D structure. There is no official homepage for this resource, and it is not currently in active development. However, the maintainer has described it as available for use via BioPortal and OBO Foundry.

Homepage http://purl.bioontology.org/ontology/OGI

Countries that developed this resource United States

Created in 2013

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: OGI; Ontology for Genetic Interval; DOI: https://doi.org/10.25504/FAIRsharing.vh9jbb; Last edited: July 16, 2019, 10 a.m.; Last accessed: Dec 06 2019 12:54 a.m.

This record is maintained by linikujp ORCID

Record updated: July 16, 2019, 9:57 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.vh9jbb' by 'The FAIRsharing Team' at 09:57, 16 Jul 2019 (approved):

	'status' has been modified:
		Before: UNC
		After: RDY

	'description' has been modified:
		Before: Using BFO (Basic Formal Ontology) as its upper-level ontology, the Ontology for Genetic Interval (OGI) represents gene as an entity with its 3D shape, topography, and primary DNA sequence as the foundation for its 3D structure. This ontology has been marked as uncertain as it has not been updated since 2016 and we cannot find an up-to-date homepage for the resource. Please contact us if you have more information.
		After: Using BFO (Basic Formal Ontology) as its upper-level ontology, the Ontology for Genetic Interval (OGI) represents gene as an entity with its 3D shape, topography, and primary DNA sequence as the foundation for its 3D structure. There is no official homepage for this resource, and it is not currently in active development. However, the maintainer has described it as available for use via BioPortal and OBO Foundry.

Edits to 'https://fairsharing.org/FAIRsharing.vh9jbb' by 'The FAIRsharing Team' at 13:55, 11 Mar 2019 (approved):

	'status' has been modified:
		Before: RDY
		After: UNC

	'yearOfCreation' has been modified:
		Before: 2008
		After: 2013

	'miriam_id' has been modified:
		Before: None
		After: 

	'description' has been modified:
		Before: Using BFO as its framework, OGI formalised the genomic element by defining an upper class ?genetic interval?. The definition of ?genetic interval? is ?the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic_Acid_Base_Residue) on a chromosome or RNA molecule which must have a liner primary sequence structure.
		After: Using BFO (Basic Formal Ontology) as its upper-level ontology, the Ontology for Genetic Interval (OGI) represents gene as an entity with its 3D shape, topography, and primary DNA sequence as the foundation for its 3D structure. This ontology has been marked as uncertain as it has not been updated since 2016 and we cannot find an up-to-date homepage for the resource. Please contact us if you have more information.

	'onto_domains' has been modified:
		Before:
			Nucleic acid sequence
			deoxyribonucleic acid
		After:
			Nucleic acid sequence
			Structure
			deoxyribonucleic acid
		Added:
			Structure
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.vh9jbb' by 'The FAIRsharing Team' at 13:30, 11 May 2017 (approved):

	'bioportal_abbreviation' has been modified:
		Before: OGI
		After: OGI

Support

General

online documentation

Google Code Archive

Additional Information

Contact

Yu Lin

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/OGI
OBO	http://obofoundry.org/ontology/ogi.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

BSD-3-Clause License (Modified BSD License) (New BSD License)

Publications

No publications available

OGI Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by linikujp ORCID

Funds

National Center for Biomedical Ontology (NCBO), Stanford, CA, USA (Research institute)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
NIH Common Fund, USA (Government body)

Grant Number(s)

http://www.bioontology.org (NIH Common Fund, USA)

Ontology for Genetic Interval

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