Did we miss something? Our COVID-19 Collection is growing, but not yet complete. Tell us what's missing. Email contact@fairsharing.org or add missing resources to our spreadsheet

Population and Community Ontology

Abbreviation: PCO

General Information

Population and Community Ontology (PCO) is an ontology standard for describing the collective and interacting species of any taxa such as humans or plants. PCO has useful application in community health care, plant pathology, behavioral studies, sociology, and ecology. The PCO is compliant with the Basic Formal Ontology (BFO) and is designed to be compatible with other OBO Foundry ontologies.

Homepage https://github.com/PopulationAndCommunityOntology/pco

Countries that developed this resource United States

Created in 2012

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PCO; Population and Community Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vq28qp; Last edited: Feb. 4, 2020, 10:58 a.m.; Last accessed: Aug 10 2020 10:23 a.m.

This record is maintained by rwalls ORCID

Record updated: Feb. 4, 2020, 10:57 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.vq28qp' by 'The FAIRsharing Team' at 10:57, 04 Feb 2020 (approved):

	'related_standards' has been modified:
		Before:
			Environment Ontology
			Basic Formal Ontology
		After:
			Environment Ontology
			Basic Formal Ontology
			OBO Relations Ontology
			Phenotypic QualiTy Ontology
			Gene Ontology
			Information Artifact Ontology
			NCBI Taxonomy
			Common Anatomy Reference Ontology
		Added:
			OBO Relations Ontology
			Phenotypic QualiTy Ontology
			Gene Ontology
			Information Artifact Ontology
			NCBI Taxonomy
			Common Anatomy Reference Ontology
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.vq28qp' by 'The FAIRsharing Team' at 10:56, 04 Feb 2020 (approved):

	'organizations' has been modified:
		Before:
		After:
			University of Arizona, United States|https://www.arizona.edu/|Maintains
		Added:
			University of Arizona, United States|https://www.arizona.edu/|Maintains
		Removed:

	'supportLinks' has been modified:
		Before:
			mailing list|popcomm-ontology@googlegroups.com
			online documentation|https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=2ahUKEwi7vt2c6pnjAhVKh1wKHakhACIQFjADegQIBhAC&url=http%3A%2F%2Fontology.buffalo.edu%2F12%2FPCO_Nov2012.pptx&usg=AOvVaw37nWc4XqEiTEo2O4Rutn64
			online documentation|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334987/
		After:
			forum|https://github.com/PopulationAndCommunityOntology/pco/issues
			mailing list|popcomm-ontology@googlegroups.com
			online documentation|https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=2ahUKEwi7vt2c6pnjAhVKh1wKHakhACIQFjADegQIBhAC&url=http%3A%2F%2Fontology.buffalo.edu%2F12%2FPCO_Nov2012.pptx&usg=AOvVaw37nWc4XqEiTEo2O4Rutn64
		Added:
			forum|https://github.com/PopulationAndCommunityOntology/pco/issues
		Removed:
			online documentation|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334987/

	'licences' has been modified:
		Before:
		After:
			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
		Added:
			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Ecology
			Life Science
			Ontology and Terminology
			Population Genetics
		After:
			Biodiversity
			Community Care
			Ecology
			Population Genetics
			Social and Behavioural Science
		Added:
			Biodiversity
			Community Care
			Social and Behavioural Science
		Removed:
			Life Science
			Ontology and Terminology

	'dataProcesses' has been modified:
		Before:
		After:
			AgroPortal: Browse / Download
		Added:
			AgroPortal: Browse / Download
		Removed:

	'publications' has been modified:
		Before:
		After:
			Meeting report: advancing practical applications of biodiversity ontologies|Ramona L Walls, Robert Guralnick, John Deck, Adam Buntzman, Pier Luigi Buttigieg, Neil Davies, Michael W Denslow, Rachel E Gallery, J Jacob Parnell, David Osumi-Sutherland, Robert J Robbins, Philippe Rocca-Serra, John Wieczorek, and Jie Zheng|Stand Genomic Sci|2014
		Added:
			Meeting report: advancing practical applications of biodiversity ontologies|Ramona L Walls, Robert Guralnick, John Deck, Adam Buntzman, Pier Luigi Buttigieg, Neil Davies, Michael W Denslow, Rachel E Gallery, J Jacob Parnell, David Osumi-Sutherland, Robert J Robbins, Philippe Rocca-Serra, John Wieczorek, and Jie Zheng|Stand Genomic Sci|2014
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.vq28qp' by 'The FAIRsharing Team' at 11:44, 08 Aug 2019 (approved):

	'countries' has been modified:
		Before:
		After:
			United States
		Added:
			United States
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.vq28qp' by 'The FAIRsharing Team' at 09:15, 08 Jul 2019 (approved):

	'supportLinks' has been modified:
		Before:
			mailing list|popcomm-ontology@googlegroups.com
			online documentation|https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=2ahUKEwi7vt2c6pnjAhVKh1wKHakhACIQFjADegQIBhAC&url=http%3A%2F%2Fontology.buffalo.edu%2F12%2FPCO_Nov2012.pptx&usg=AOvVaw37nWc4XqEiTEo2O4Rutn64
		After:
			mailing list|popcomm-ontology@googlegroups.com
			online documentation|https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=2ahUKEwi7vt2c6pnjAhVKh1wKHakhACIQFjADegQIBhAC&url=http%3A%2F%2Fontology.buffalo.edu%2F12%2FPCO_Nov2012.pptx&usg=AOvVaw37nWc4XqEiTEo2O4Rutn64
			online documentation|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334987/
		Added:
			online documentation|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334987/
		Removed:

	'contactORCID' has been modified:
		Before: 
		After: 0000-0001-8815-0078

	'onto_disciplines' has been modified:
		Before:
			Population Genetics
		After:
			Ecology
			Life Sciences
			Ontology and Terminology
			Population Genetics
		Added:
			Ecology
			Life Sciences
			Ontology and Terminology
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			Biological Evolution
		Added:
			Biological Evolution
		Removed:

	'contactEmail' has been modified:
		Before: popcomm-ontology@googlegroups.com
		After: rlwalls2008@gmail.com

	'contact' has been modified:
		Before: General contact
		After: Ramona Walls

Edits to 'https://fairsharing.org/FAIRsharing.vq28qp' by 'The FAIRsharing Team' at 23:56, 03 Jul 2019 (approved):

	'supportLinks' has been modified:
		Before:
			mailing list|popcomm-ontology@googlegroups.com
		After:
			mailing list|popcomm-ontology@googlegroups.com
			online documentation|https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=2ahUKEwi7vt2c6pnjAhVKh1wKHakhACIQFjADegQIBhAC&url=http%3A%2F%2Fontology.buffalo.edu%2F12%2FPCO_Nov2012.pptx&usg=AOvVaw37nWc4XqEiTEo2O4Rutn64
		Added:
			online documentation|https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=2ahUKEwi7vt2c6pnjAhVKh1wKHakhACIQFjADegQIBhAC&url=http%3A%2F%2Fontology.buffalo.edu%2F12%2FPCO_Nov2012.pptx&usg=AOvVaw37nWc4XqEiTEo2O4Rutn64
		Removed:

	'contact' has been modified:
		Before: 
		After: General contact

	'miriam_id' has been modified:
		Before: None
		After: 

	'description' has been modified:
		Before: The Population and Community Ontology (PCO) models material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. The PCO is complient with the Basic Formal Ontology (BFO) and is designed to be compatible with other OBO Foundry ontologies. 
		After: Population and Community Ontology (PCO) is an ontology standard for describing the collective and interacting species of any taxa such as humans or plants.  PCO has useful application in community health care, plant pathology, behavioral studies, sociology, and ecology. The PCO is compliant with the Basic Formal Ontology (BFO) and is designed to be compatible with other OBO Foundry ontologies.

Edits to 'https://fairsharing.org/FAIRsharing.vq28qp' by 'The FAIRsharing Team' at 15:41, 21 Sep 2016 (approved):

	'contactEmail' has been modified:
		Before: 
		After: popcomm-ontology@googlegroups.com

Support

General

forum	GitHub Issue Tracker
Mailing List	popcomm-ontology@googlegroups.com
online documentation	Presentation

Additional Information

Contact

Ramona Walls ORCID

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/PCO
OBO	http://obofoundry.org/ontology/pco.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

Data Access

AgroPortal: Browse / Download

http://agroportal.lirmm.fr/ontologies/PCO

Publications

Meeting report: advancing practical applications of biodiversity ontologies

Ramona L Walls, Robert Guralnick, John Deck, Adam Buntzman, Pier Luigi Buttigieg, Neil Davies, Michael W Denslow, Rachel E Gallery, J Jacob Parnell, David Osumi-Sutherland, Robert J Robbins, Philippe Rocca-Serra, John Wieczorek, and Jie Zheng
Stand Genomic Sci 2014

Link to Publication

PCO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (0)

No Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by rwalls ORCID

Maintains

University of Arizona, United States (University)

Population and Community Ontology

We need your help!

Developed by

Contact Us

About FAIRsharing