Minimum Information Required for A Glycomics Experiment - Sample Preparation

Abbreviation: MIRAGE - Sample Preparation

General Information

MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. The sample preparation guidelines are designed to include all aspects of sample generation, purification and modification from biological and/or synthetic material. Fundamentally, the application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets. In addition, these guidelines are considered as a common basis for any further MIRAGE reporting guidelines in order to keep the requirements for data analysis short and consistent.

Homepage http://www.beilstein-institut.de/en/projects/mirage/guidelines#sample_preparations

Countries that developed this resource Australia , Germany , Sweden , Switzerland , United Kingdom , United States

Created in 2016

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: Jan. 17, 2019, 11:45 a.m.; Last accessed: Feb 18 2020 4:05 p.m.

This record is maintained by CKettner ORCID

Record added: Oct. 20, 2016, 8:16 p.m.
Record updated: Jan. 17, 2019, 11:44 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.vrhbra' by 'The FAIRsharing Team' at 11:44, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Beilstein-Institut, Frankfurt am Main, Germany|http://www.beilstein-institut.de|Funds
			The Complex Carbohydrate Research Center (CCRC), University of Georgia, GA, USA|http://www.ccrc.uga.edu|Maintains
			Macquarie University, Sydney, Australia|http://www.mq.edu.au/|Maintains
			Swiss Institute of Bioinformatics (SIB)|http://www.sib.swiss/|Maintains
			University of Gothenburg|http://biomedicine.gu.se/biomedicine/research/niclas-karlsson/|Maintains
			University of Oxford, Department of Chemistry, UK|http://benesch.chem.ox.ac.uk/scientists_files/7f2a0e02cad507e1d401e6b5c32319e9-44.html|Undefined
		After:
			Beilstein-Institut, Frankfurt am Main, Germany|http://www.beilstein-institut.de|Funds
			The Complex Carbohydrate Research Center (CCRC), University of Georgia, GA, USA|http://www.ccrc.uga.edu|Maintains
			Macquarie University, Sydney, Australia|http://www.mq.edu.au/|Maintains
			Swiss Institute of Bioinformatics (SIB)|http://www.sib.swiss/|Maintains
			University of Gothenburg|https://www.gu.se/|Maintains
			University Of Oxford, UK|http://www.ox.ac.uk|Maintains
		Added:
			University of Gothenburg|https://www.gu.se/|Maintains
			University Of Oxford, UK|http://www.ox.ac.uk|Maintains
		Removed:
			University of Gothenburg|http://biomedicine.gu.se/biomedicine/research/niclas-karlsson/|Maintains
			University of Oxford, Department of Chemistry, UK|http://benesch.chem.ox.ac.uk/scientists_files/7f2a0e02cad507e1d401e6b5c32319e9-44.html|Undefined

	'miriam_id' has been modified:
		Before: None
		After: 

	'description' has been modified:
		Before: MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature.  The sample preparation guidelines are designed to include all aspects of sample generation, purification and modification from biological and/or synthetic material. Fundamentally, the application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets. 
In addition, these guidelines are considered as a common basis for any further MIRAGE reporting guidelines in order to keep the requirements for data analysis short and consistent.
		After: MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature.  The sample preparation guidelines are designed to include all aspects of sample generation, purification and modification from biological and/or synthetic material. Fundamentally, the application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets. 
In addition, these guidelines are considered as a common basis for any further MIRAGE reporting guidelines in order to keep the requirements for data analysis short and consistent.

	'onto_domains' has been modified:
		Before:
			sample preparation for assay
		After:
			protocol
			sample preparation for assay
		Added:
			protocol
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.vrhbra' by 'CKettner' at 09:04, 31 Mar 2017 (approved):

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-8697-6842 Related standards have changed:  Previous values: New values:  bsg-s000683: Minimum Information Required for A Glycomics Experiment -  Glycan Microarray Analysis bsg-s000523: Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis Countries have changed:  Previous values: Germany United States of America New values:  Germany United States of America United Kingdom Sweden Switzerland Australia Related systems have changed:  Previous values: New values:  biodbcore-000692: UniCarbKB Publication List has changed:  Previous values: MIRAGE: the minimum information required for a glycomics experiment. New values:  MIRAGE: the minimum information required for a glycomics experiment. The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Organisations have changed:  Previous values: Beilstein-Institut|Frankfurt am Main|Germany CCRC|University of Athens|GA|USA New values:  Beilstein-Institut|Frankfurt am Main|Germany CCRC|University of Athens|GA|USA University of Gothenburg University of Oxford|Department of Chemistry|UK Macquarie University|Sydney|Australia SIB|Swiss Institute of Bioinformatics

Support

General

online documentation

http://www.beilstein-institut.de/downloa ...

Additional Information

Contact

Carsten Kettner ORCID

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Publications

MIRAGE: the minimum information required for a glycomics experiment.

York WS,Agravat S,Aoki-Kinoshita KF,McBride R,Campbell MP,Costello CE,Dell A,Feizi T,Haslam SM,Karlsson N,Khoo KH,Kolarich D,Liu Y,Novotny M,Packer NH,Paulson JC,Rapp E,Ranzinger R,Rudd PM,Smith DF,Struwe WB,Tiemeyer M,Wells L,Zaia J,Kettner C
Glycobiology 2014

View Paper (PubMed) View Publication

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB,Agravat S,Aoki-Kinoshita KF,Campbell MP,Costello CE,Dell A,Ten Feizi,Haslam SM,Karlsson NG,Khoo KH,Kolarich D,Liu Y,McBride R,Novotny MV,Packer NH,Paulson JC,Rapp E,Ranzinger R,Rudd PM,Smith DF,Tiemeyer M,Wells L,York WS,Zaia J,Kettner C
Glycobiology 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (3)

UniCarbKB
UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the adoption of common standards to integrate structural, experimental and functional data.

UniCarb-DB
UniCarb-DB is a curated database of glycomic mass spectrometry fragment data.

UniCarb-DR
A repository of glycans with associated MS information and spectra. The repository allows researcher to submit their glycomics MS data for public display. The data is not curated by other than then data provider. Curated data will be transfered to UniCarb-DR

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by CKettner ORCID

Funds

Beilstein-Institut, Frankfurt am Main, Germany (Charitable foundation)

Maintains

The Complex Carbohydrate Research Center (CCRC), University of Georgia, GA, USA (Research institute)
Macquarie University, Sydney, Australia (University)
Swiss Institute of Bioinformatics (SIB) (Research institute)
University of Gothenburg (University)
University Of Oxford, UK (University)

Minimum Information Required for A Glycomics Experiment - Sample Preparation

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