Edits to 'https://fairsharing.org/FAIRsharing.wOcTaM' by 'The FAIRsharing Team' at 16:33, 18 Feb 2021 (approved):
'organizations' has been modified:
Before:
The National Evolutionary Synthesis Center (NESCent), USA|https://www.nescent.org|Funds
National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
David and Lucile Packard Foundation, Los Altos, CA, USA|https://www.packard.org/|Funds
BID: Biodiversity Information for Development|https://www.gbif.org/fr/programme/82243/bid-biodiversity-information-for-development|Funds
Dongsha Atoll Research Station (DARS)|https://dongsha-mr.nsysu.edu.tw/p/406-1272-204375,r1755.php?Lang=zh-tw|Maintains
California State University, Monterey Bay, Marina, CA, USA|https://csumb.edu/|Undefined
After:
National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
The Gordon and Betty Moore Foundation, USA|https://www.moore.org/|Funds
National Oceanic and Atmospheric Administration (NOAA) MD, USA|https://www.noaa.gov|Funds
Berkeley National History Museums, University of California, Berkeley, CA, USA|https://bnhm.berkeley.edu/|Maintains
Hawaii Institute of Marine Biology, University of Hawaii, Kaneohe, HI, USA|http://www.himb.hawaii.edu/|Maintains
Biocode, LLC, Junction City, Oregon, USA|https://biocodellc.com/|Maintains
Smithsonian National Museum of Natural History, Washington DC, USA|https://naturalhistory.si.edu/|Maintains
University of Queensland, Australia|http://uq.edu.au/|Maintains
Pennsylvania State University, University Park, PA, USA|https://www.psu.edu/|Maintains
Added:
The Gordon and Betty Moore Foundation, USA|https://www.moore.org/|Funds
National Oceanic and Atmospheric Administration (NOAA) MD, USA|https://www.noaa.gov|Funds
Berkeley National History Museums, University of California, Berkeley, CA, USA|https://bnhm.berkeley.edu/|Maintains
Hawaii Institute of Marine Biology, University of Hawaii, Kaneohe, HI, USA|http://www.himb.hawaii.edu/|Maintains
Biocode, LLC, Junction City, Oregon, USA|https://biocodellc.com/|Maintains
Smithsonian National Museum of Natural History, Washington DC, USA|https://naturalhistory.si.edu/|Maintains
University of Queensland, Australia|http://uq.edu.au/|Maintains
Pennsylvania State University, University Park, PA, USA|https://www.psu.edu/|Maintains
Removed:
The National Evolutionary Synthesis Center (NESCent), USA|https://www.nescent.org|Funds
David and Lucile Packard Foundation, Los Altos, CA, USA|https://www.packard.org/|Funds
BID: Biodiversity Information for Development|https://www.gbif.org/fr/programme/82243/bid-biodiversity-information-for-development|Funds
Dongsha Atoll Research Station (DARS)|https://dongsha-mr.nsysu.edu.tw/p/406-1272-204375,r1755.php?Lang=zh-tw|Maintains
California State University, Monterey Bay, Marina, CA, USA|https://csumb.edu/|Undefined
'standardsImplemented' has been modified:
Before:
After:
FASTA Sequence Format
FASTQ Sequence and Sequence Quality Format
Minimum Information about any (x) Sequence
Darwin Core
Resource Description Framework
Added:
FASTA Sequence Format
FASTQ Sequence and Sequence Quality Format
Minimum Information about any (x) Sequence
Darwin Core
Resource Description Framework
Removed:
'related_databases' has been modified:
Before:
After:
GenBank
Sequence Read Archive
Added:
GenBank
Sequence Read Archive
Removed:
'supportLinks' has been modified:
Before:
help|https://geome-db.org/about
online documentation|http://diversityindopacific.net/workshops-meetings/
After:
FAQ|https://docs.google.com/document/d/1tEFpclCyJ6aLnypmtdfdjLVhiWQ-rYhGqu5eGhq3s5s/edit
email|jdeck@berkeley.edu
help|https://geome-db.org/docs/helpDocumentation.pdf
online documentation|https://geome-db.org/about
Added:
FAQ|https://docs.google.com/document/d/1tEFpclCyJ6aLnypmtdfdjLVhiWQ-rYhGqu5eGhq3s5s/edit
email|jdeck@berkeley.edu
help|https://geome-db.org/docs/helpDocumentation.pdf
online documentation|https://geome-db.org/about
Removed:
help|https://geome-db.org/about
online documentation|http://diversityindopacific.net/workshops-meetings/
'name' has been modified:
Before: Diversity of the Indo-Pacific Network
After: Genomic Observatories Meta-Database
'licences' has been modified:
Before:
DIPnet Data Usage Agreement|http://diversityindopacific.net/data-usage-agreement/|Data
After:
GEOME Data Usage Policy|https://geome-db.org/about|Data
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
Added:
GEOME Data Usage Policy|https://geome-db.org/about|Data
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
Removed:
DIPnet Data Usage Agreement|http://diversityindopacific.net/data-usage-agreement/|Data
'tools' has been modified:
Before:
After:
GEOME R Package||https://cran.r-project.org/web/packages/geomedb/index.html
Biocode LIMS Plugin||https://github.com/biocodellc/biocode-lims/releases
Added:
GEOME R Package||https://cran.r-project.org/web/packages/geomedb/index.html
Biocode LIMS Plugin||https://github.com/biocodellc/biocode-lims/releases
Removed:
'onto_disciplines' has been modified:
Before:
Biodiversity
Data Submission, Annotation and Curation
Genetics
Life Science
Oceania Studies
Oceanography
After:
Biodiversity
Ecology
Evolutionary Biology
Genetics
Oceanography
Added:
Ecology
Evolutionary Biology
Removed:
Data Submission, Annotation and Curation
Life Science
Oceania Studies
'onto_domains' has been modified:
Before:
Resource metadata
After:
Biospecimen
Evolution
centrally registered identifier
None
Added:
Biospecimen
Evolution
centrally registered identifier
None
Removed:
Resource metadata
'contact' has been modified:
Before: Professor Cynthia Riginos
After: Eric Crandall
'contactEmail' has been modified:
Before: c.riginos@uq.edu.au
After: ecrandall@psu.edu
'grants' has been modified:
Before:
After:
DBI-0956426; Biological Science Collections Tracker
DEB-1457848; DIPnet RCN
EF-0905606; NESCent catalysis and working group funding
GBMF1619 Moorea Biocode
NMFS-PIRO-NA15NMF4270330
Added:
DBI-0956426; Biological Science Collections Tracker
DEB-1457848; DIPnet RCN
EF-0905606; NESCent catalysis and working group funding
GBMF1619 Moorea Biocode
NMFS-PIRO-NA15NMF4270330
Removed:
'publications' has been modified:
Before:
After:
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.|Deck J,Gaither MR,Ewing R,Bird CE,Davies N,Meyer C,Riginos C,Toonen RJ,Crandall ED|PLoS Biol|2017
Added:
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.|Deck J,Gaither MR,Ewing R,Bird CE,Davies N,Meyer C,Riginos C,Toonen RJ,Crandall ED|PLoS Biol|2017
Removed:
'yearOfCreation' has been modified:
Before: 2012
After: 2017
'dataProcesses' has been modified:
Before:
Search the database, data access, https://geome-db.org/query
Upload your data, data access, https://geome-db.org/
Propose a paper, data curation, http://diversityindopacific.net/how-to-propose-a-paper/
GitHub repository, data access, http://dipnet.github.io/popgenDB/
Workbench, data access, https://geome-db.org/workbench/dashboard
After:
Query Data (Map View), data access, https://geome-db.org/query
Workbench (Browse Data), data access, https://geome-db.org/workbench/dashboard
Added:
Query Data (Map View), data access, https://geome-db.org/query
Workbench (Browse Data), data access, https://geome-db.org/workbench/dashboard
Removed:
Search the database, data access, https://geome-db.org/query
Upload your data, data access, https://geome-db.org/
Propose a paper, data curation, http://diversityindopacific.net/how-to-propose-a-paper/
GitHub repository, data access, http://dipnet.github.io/popgenDB/
Workbench, data access, https://geome-db.org/workbench/dashboard
'shortname' has been modified:
Before: DIPnet
After: GEOME
'accessPoints' has been modified:
Before:
After:
REST|https://api.geome-db.org/apidocs/|Swagger API documentation
Added:
REST|https://api.geome-db.org/apidocs/|Swagger API documentation
Removed:
'homepage' has been modified:
Before: http://diversityindopacific.net/
After: https://geome-db.org/
'description' has been modified:
Before: The Diversity of the Indo-Pacific Network (DIPnet) aims to advance genetic diversity research in the Indo-Pacific by aggregating population genetic metadata into a searchable database (GeOME). The primary goal is to promote collaboration and advocate best practices for conducting biodiversity research.
After: The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.
Edits to 'https://fairsharing.org/FAIRsharing.wOcTaM' by 'The FAIRsharing Team' at 15:05, 15 Feb 2021 (approved):
'contactEmail' has been modified:
Before: ecrandall@csumb.edu
After: c.riginos@uq.edu.au
'contact' has been modified:
Before: Eric D. Crandall
After: Professor Cynthia Riginos
'contactORCID' has been modified:
Before: 0000-0001-8580-3651
After:
Edits to 'https://fairsharing.org/FAIRsharing.wOcTaM' by 'The FAIRsharing Team' at 16:55, 05 Jun 2020 (approved):
'description' has been modified:
Before: The Diversity of the Indo-Pacific Network (DIPnet) aims at advance genetic diversity research in the Indo-Pacific by aggregating population genetic metadata into a searchable database (GeOME). Our primary goal to promote collaboration and advocate best practices for conducting biodiversity research.
After: The Diversity of the Indo-Pacific Network (DIPnet) aims to advance genetic diversity research in the Indo-Pacific by aggregating population genetic metadata into a searchable database (GeOME). The primary goal is to promote collaboration and advocate best practices for conducting biodiversity research.
Edits to 'https://fairsharing.org/FAIRsharing.wOcTaM' by 'The FAIRsharing Team' at 12:09, 27 May 2020 (approved):
'organizations' has been modified:
Before:
The National Evolutionary Synthesis Center (NESCent), USA|https://www.nescent.org|Funds
National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
Dongsha Atoll Research Station (DARS) |https://dongsha-mr.nsysu.edu.tw/p/406-1272-204375,r1755.php?Lang=zh-tw|Maintains
David and Lucile Packard Foundation, Los Altos, CA, USA|https://www.packard.org/|Funds
BID: Biodiversity Information for Development|https://www.gbif.org/fr/programme/82243/bid-biodiversity-information-for-development|Funds
After:
The National Evolutionary Synthesis Center (NESCent), USA|https://www.nescent.org|Funds
National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
David and Lucile Packard Foundation, Los Altos, CA, USA|https://www.packard.org/|Funds
BID: Biodiversity Information for Development|https://www.gbif.org/fr/programme/82243/bid-biodiversity-information-for-development|Funds
Dongsha Atoll Research Station (DARS) |https://dongsha-mr.nsysu.edu.tw/p/406-1272-204375,r1755.php?Lang=zh-tw|Maintains
California State University, Monterey Bay, Marina, CA, USA|https://csumb.edu/|Undefined
Added:
California State University, Monterey Bay, Marina, CA, USA|https://csumb.edu/|Undefined
Removed: