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Protein Model Database

Abbreviation:PMDB

General Information

The Protein Model DataBase (PMDB) is a database that stores three dimensional protein models obtained by structure prediction techniques.

Homepage http://srv00.recas.ba.infn.it/PMDB/main.php

Countries that developed this resource Italy

Created in 2005

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PMDB; Protein Model Database; DOI: https://doi.org/10.25504/FAIRsharing.wkaakq; Last edited: June 22, 2020, 12:08 p.m.; Last accessed: Aug 10 2020 5:39 a.m.

Publication for citation The PMDB Protein Model Database. Castrignanò T., De Meo PD., Cozzetto D., Talamo IG., Tramontano A., ; Nucleic Acids Res. ; 2006; 10.1093/nar/gkj105;

This record is maintained by CinecaBioteam

Record updated: June 22, 2020, 12:07 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.wkaakq' by 'The FAIRsharing Team' at 12:07, 22 Jun 2020 (approved):

	'organizations' has been modified:
		Before:
			Sapienza University of Rome, Rome, Italy|http://www.uniroma1.it/|Funds
			CINECA, Bologna, Italy|http://www.cineca.it|Maintains
			BioSapiens Network of Excellence, Europe|http://cordis.europa.eu/project/rcn/75293_en.html|Funds
			EU BIOSAPIENS|https://ec.europa.eu/research/health/genomics/newsletter/issue4/article03_en.htm|Funds
		After:
			Sapienza University of Rome, Rome, Italy|http://www.uniroma1.it/|Funds
			BioSapiens Network of Excellence, Europe|http://cordis.europa.eu/project/rcn/75293_en.html|Funds
			CINECA, Bologna, Italy|http://www.cineca.it|Maintains
		Added:
		Removed:
			EU BIOSAPIENS|https://ec.europa.eu/research/health/genomics/newsletter/issue4/article03_en.htm|Funds

Edits to 'https://fairsharing.org/FAIRsharing.wkaakq' by 'The FAIRsharing Team' at 12:06, 22 Jun 2020 (approved):

	'organizations' has been modified:
		Before:
			EU BIOSAPIENS|https://ec.europa.eu/research/health/genomics/newsletter/issue4/article03_en.htm|Funds
			Sapienza University of Rome, Rome, Italy|http://www.uniroma1.it/|Funds
			CINECA, Bologna, Italy|http://www.cineca.it|Maintains
		After:
			Sapienza University of Rome, Rome, Italy|http://www.uniroma1.it/|Funds
			CINECA, Bologna, Italy|http://www.cineca.it|Maintains
			BioSapiens Network of Excellence, Europe|http://cordis.europa.eu/project/rcn/75293_en.html|Funds
			EU BIOSAPIENS|https://ec.europa.eu/research/health/genomics/newsletter/issue4/article03_en.htm|Funds
		Added:
			BioSapiens Network of Excellence, Europe|http://cordis.europa.eu/project/rcn/75293_en.html|Funds
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.wkaakq' by 'The FAIRsharing Team' at 12:04, 22 Jun 2020 (approved):

	'supportLinks' has been modified:
		Before:
			email|hpc-service-bio@cineca.it
			email|info@biocomputing.it
			help|https://bioinformatics.cineca.it/PMDB/help.php
		After:
			blog|http://srv00.recas.ba.infn.it/PMDB/my_news.php
			email|hpc-service-bio@cineca.it
			email|info@biocomputing.it
			help|http://srv00.recas.ba.infn.it/PMDB/help.php
		Added:
			blog|http://srv00.recas.ba.infn.it/PMDB/my_news.php
			help|http://srv00.recas.ba.infn.it/PMDB/help.php
		Removed:
			help|https://bioinformatics.cineca.it/PMDB/help.php

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Structural Biology
		Added:
			Structural Biology
		Removed:
			Life Science

	'homepage' has been modified:
		Before: https://bioinformatics.cineca.it/PMDB
		After: http://srv00.recas.ba.infn.it/PMDB/main.php

	'description' has been modified:
		Before: The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.
		After: The Protein Model DataBase (PMDB) is a database that stores three dimensional protein models obtained by structure prediction techniques.

	'dataProcesses' has been modified:
		Before:
			search, data access, https://bioinformatics.cineca.it/PMDB/user/user.php?search_choose=Model&align=noalign
			register, data access, https://bioinformatics.cineca.it/PMDB/user/register.php?search=1&predictor=0
		After:
			Search, data access, http://srv00.recas.ba.infn.it/PMDB/user/user.php?search_choose=Model&align=noalign
		Added:
			Search, data access, http://srv00.recas.ba.infn.it/PMDB/user/user.php?search_choose=Model&align=noalign
		Removed:
			search, data access, https://bioinformatics.cineca.it/PMDB/user/user.php?search_choose=Model&align=noalign
			register, data access, https://bioinformatics.cineca.it/PMDB/user/register.php?search=1&predictor=0

Edits to 'https://fairsharing.org/FAIRsharing.wkaakq' by 'The FAIRsharing Team' at 11:42, 16 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Anna Tramontano
		Added:
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

blog	News
support email	hpc-service-bio@cineca.it
support email	info@biocomputing.it
help	Help Page

Additional Information

Contact

Anna Tramontano

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Attribution required
Publicly available data

Data Access

http://srv00.recas.ba.infn.it/PMDB/user/user.php?search_choose=Model&a ...

Publications

The PMDB Protein Model Database.

Castrignanò T., De Meo PD., Cozzetto D., Talamo IG., Tramontano A.,
Nucleic Acids Res. 2006

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by CinecaBioteam

Funds

Sapienza University of Rome, Rome, Italy (University)
BioSapiens Network of Excellence, Europe (Government body)

Maintains

CINECA, Bologna, Italy (Consortium)

Grant Number(s)

LHSG-CT-203-503265 (BioSapiens Network of Excellence, Europe)

Protein Model Database

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