FAIRsharing is now available for record creation, update, and search at https://beta.fairsharing.org, please visit us there! This read-only version of the legacy site will be replaced with the new version of FAIRsharing in the coming weeks.

Interrupted coding sequences

Abbreviation:ICDS

General Information

ICDS database is a database containing ICDS detected by a similarity-based approach. The definition of each interrupted gene is provided as well as the ICDS genomic localisation with the surrounding sequence.

Homepage http://www-bio3d-igbmc.u-strasbg.fr/ICDS/

Countries that developed this resource France

Taxonomic range

Bacteria

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: ICDS; Interrupted coding sequences; DOI: https://doi.org/10.25504/FAIRsharing.wqyw8s; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Oct 19 2021 1:17 p.m.

Record updated: April 20, 2021, 2:45 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.wqyw8s' by 'The FAIRsharing Team' at 14:45, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Publicly available data||Data
		After:
		Added:
		Removed:
			Publicly available data||Data

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.wqyw8s' by 'The FAIRsharing Team' at 13:24, 30 Dec 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Odile Lecompte
			Domain list has changed: 
			Previous values:
			Gene|property|http://purl.org/obo/owl/SO#SO_0000704
			New values: 
			Gene|property|http://purl.org/obo/owl/SO#SO_0000704
			Life Science|domain|
			Genomics||
			Gene sequence data||
			Tools have changed: 
			Previous values:
			BLAST
			browse
			BLAST
			browse
			New values: 
			BLAST
			Data processes have changed: 
			Previous values:
			New values: 
			browse
			Organisations have changed: 
			Previous values:
			Institut de Gntique et de Biologie Molculaire et Cellulaire (IGBMC)| France
			Laboratory of Microbiology and Molecular Genetics|France
			New values: 
			Institut de Gntique et de Biologie Molculaire et Cellulaire (IGBMC)| France
			Laboratory of Microbiology and Molecular Genetics|France
			French Institut national de la sant et de la recherche mdicale (INSERM)
			National Centre for Scientific Research|CNRS|France
		Added:
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

help	http://www-bio3d-igbmc.u-strasbg.fr/ICDS ...

Additional Information

Contact

Odile Lecompte

Tools

BLAST

http://www-bio3d-igbmc.u-strasbg.fr/ICDS/

Access / Retrieve Data

Conditions of Use

Data Access

browse

http://www-bio3d-igbmc.u-strasbg.fr/%7Eripp/cgi-bin/gscope_html_server ...

Publications

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat JM., Lecompte O.,
Nucleic Acids Res. 2006

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Institut national de la sante et de la recherche medicale (INSERM), Paris, France (Government body)

Maintains

National Centre for Scientific Research (CNRS), Paris, France (Research institute)
Institut de Genetique et de Biologie Moleculaire et Cellulaire (IGBMC), Illkirch-Graffenstaden, France (Government body)
Laboratoire de Microbiologie et Genetique Moleculaires (LMGM), Toulouse, France (Lab)

Interrupted coding sequences

We need your help!

Developed by

Contact Us

About FAIRsharing