Influenza Research Database
Abbreviation:IRD
Homepage http://www.fludb.org
Countries that developed this resource United States
Created in 2008
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: IRD; Influenza Research Database; DOI: https://doi.org/10.25504/FAIRsharing.ws7cgw; Last edited: March 30, 2020, 1:15 p.m.; Last accessed: Sep 22 2020 1:20 a.m.
Publication for citation Influenza Research Database: An integrated bioinformatics resource for influenza virus research. Zhang Y,Aevermann BD,Anderson TK,Burke DF,Dauphin G,Gu Z,He S,Kumar S,Larsen CN,Lee AJ,Li X,Macken C,Mahaffey C,Pickett BE,Reardon B,Smith T,Stewart L,Suloway C,Sun G,Tong L,Vincent AL,Walters B,Zaremba S,Zhao H,Zhou L,Zmasek C,Klem EB,Scheuermann RH; Nucleic Acids Res ; 2016; 10.1093/nar/gkw857 ;
Record updated: March 30, 2020, 1:13 p.m. by The FAIRsharing Team.
| contact form | Contact Information |
| support email | influenza@virusbrc.org |
| help | General Help |
| online documentation | Protocols Used |
| training | IRD Tutorials and Training Materials |
Additional Information
| Contact | Richard Scheuermann ORCID |
| Identify Similar Sequences (BLAST) | https://www.fludb.org/brc/blast.spg?method=ShowCleanInputPage&decorato ... |
| Generate Phylogenetic Tree (PhyML and RaxML) | https://www.fludb.org/brc/tree.spg?method=ShowCleanInputPage&decorator ... |
| Align Sequences (MSA) via MUSCLE | https://www.fludb.org/brc/msa.spg?method=ShowCleanInputPage&decorator= ... |
| Workbench | https://www.fludb.org/brc/workbench_landing.spg?decorator=influenza&me ... |
Conditions of Use
Data Curation
| manual curation | No link recorded |
| automated curation | No link recorded |
| Submit | https://www.fludb.org/brc/submission_landing.spg?decorator=influenza |
Data Access
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance
Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH.
Influenza Other Respi Viruses 2012
Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction
Noronha JM, Liu M, Squires RB, Pickett BE, Hale BG, Air GM, Galloway SE, Takimoto T, Schmolke M, Hunt V, Klem E, García-Sastre A, McGee M, Scheuermann RH
J Virol 2012
Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes
Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, Scheuermann RH
Virology 2013
Standardized metadata for human pathogen/vector genomic sequences.
Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH
PLoS One 2014
A comprehensive collection of systems biology data characterizing the host response to viral infection.
Aevermann BD,Pickett BE,Kumar S,Klem EB,Agnihothram S,Askovich PS,Bankhead A 3rd,Bolles M,Carter V,Chang J,Clauss TR,Dash P,Diercks AH,Eisfeld AJ,Ellis A,Fan S,Ferris MT,Gralinski LE,Green RR,Gritsenko MA,Hatta M,Heegel RA,Jacobs JM,Jeng S,Josset L,Kaiser SM,Kelly S,Law GL,Li C,Li J,Long C,Luna ML,Matzke M,McDermott J,Menachery V,Metz TO,Mitchell H,Monroe ME,Navarro G,Neumann G,Podyminogin RL,Purvine SO,Rosenberger CM,Sanders CJ,Schepmoes AA,Shukla AK,Sims A,Sova P,Tam VC,Tchitchek N,Thomas PG,Tilton SC,Totura A,Wang J,Webb-Robertson BJ,Wen J,Weiss JM,Yang F,Yount B,Zhang Q,McWeeney S,Smith RD,Waters KM,Kawaoka Y,Baric R,Aderem A,Katze MG,Scheuermann RH
Sci Data 2014
Toward a method for tracking virus evolutionary trajectory applied to the pandemic H1N1 2009 influenza virus.
Squires RB,Pickett BE,Das S,Scheuermann RH
Infect Genet Evol 2014
Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.
Lee AJ,Das SR,Wang W,Fitzgerald T,Pickett BE,Aevermann BD,Topham DJ,Falsey AR,Scheuermann RH
J Virol 2015
A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
Miller MA,Schwartz T,Pickett BE,He S,Klem EB,Scheuermann RH,Passarotti M,Kaufman S,O'Leary MA
Evol Bioinform Online 2015
Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
Zhang Y,Aevermann BD,Anderson TK,Burke DF,Dauphin G,Gu Z,He S,Kumar S,Larsen CN,Lee AJ,Li X,Macken C,Mahaffey C,Pickett BE,Reardon B,Smith T,Stewart L,Suloway C,Sun G,Tong L,Vincent AL,Walters B,Zaremba S,Zhao H,Zhou L,Zmasek C,Klem EB,Scheuermann RH
Nucleic Acids Res 2016
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Record Maintainer
Funds
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA (Government body)
Maintains
J. Craig Venter Institute (JCVI), La Jolla, CA, USA (Research institute)
Northrop Grumman Health IT (Company)
Vecna Technologies (Company)
Grant Number(s)
HHSN272201400028C (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)
