ProtoNet
Homepage http://www.protonet.cs.huji.ac.il/
Developed in Israel
Created in 2002
Taxonomic range
Knowledge Domains BETA
Subjects BETA
User-defined Tags
How to cite this record FAIRsharing.org: ProtoNet; ProtoNet; DOI: https://doi.org/10.25504/FAIRsharing.wv5q9d; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 19 2019 10:26 a.m.
Record updated: Jan. 10, 2018, 11:52 a.m. by The FAIRsharing Team.
| contact form | http://www.protonet.cs.huji.ac.il/feedba ... |
Additional Information
| Contact | General contact |
Conditions of Use
Data Versioning
| versioning by release | No link recorded |
Data Release
| yearly release | No link recorded |
Data Curation
| automated curation | No link recorded |
Data Access
| web interface | No link recorded |
| file download(CSV,txt,tab-delimited) | No link recorded |
ProtoNet: hierarchical classification of the protein space.
Sasson O., Vaaknin A., Fleischer H., Portugaly E., Bilu Y., Linial N., Linial M.,
Nucleic Acids Res. 2003
ProtoNet 4.0: a hierarchical classification of one million protein sequences.
Kaplan N., Sasson O., Inbar U., Friedlich M., Fromer M., Fleischer H., Portugaly E., Linial N., Linial M.,
Nucleic Acids Res. 2005
Fishing with (Proto)Net-a principled approach to protein target selection.
Linial M.,
Comp. Funct. Genomics 2003
Connect the dots: exposing hidden protein family connections from the entire sequence tree.
Loewenstein Y., Linial M.,
Bioinformatics 2008
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
Loewenstein Y., Portugaly E., Fromer M., Linial M.,
Bioinformatics 2008
Functional annotation prediction: all for one and one for all.
Sasson O., Kaplan N., Linial M.,
Protein Sci. 2006
A functional hierarchical organization of the protein sequence space.
Kaplan N., Friedlich M., Fromer M., Linial M.,
BMC Bioinformatics 2004
A robust method to detect structural and functional remote homologues.
Shachar O., Linial M.,
Proteins 2004
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree.
Rappoport N,Karsenty S,Stern A,Linial N,Linial M
Nucleic Acids Res 2011
ProtoNet: charting the expanding universe of protein sequences.
Rappoport N,Linial N,Linial M
Nat Biotechnol 2013
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Metrics
No metrics standards defined
- Pfam
- Simple Modular Architecture Research Tool
- Gene3D
- Integrated resource of protein families, domains and functional sites
- ProDom
- TIGRFAMs
- Structural Classification Of Proteins
- PIR SuperFamily
- Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
- PROSITE
- UniProt Knowledgebase
- CATH Protein Structure Classification
- PRINTS
- Worldwide Protein Data Bank
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Funds
European Community Seventh Framework Programme (Government body)
Horowitz Foundation for Social Policy (Government body)
Israel Science Foundation, Israel (Government body)
Ministry of Defence, Tel Aviv, Israel (Government body)
Minister of Science, Technology and Space (MOST), Tel Aviv, Israel (Government body)
The Sudarsky Center for Computational Biology (SCCB) Hebrew University of Jerusalem
Maintains
Grant Number(s)
ISF 592/07 (Israel Science Foundation, Israel)
