standards > model/format > DOI:10.25504/FAIRsharing.wvgta9


ready Hierarchical Data Format (HDF)

Abbreviation: HDF5


General Information
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.

Homepage http://www.hdfgroup.org/HDF5/

Countries that developed this resource United States

Created in 2008

Taxonomic range




How to cite this record FAIRsharing.org: HDF5; Hierarchical Data Format (HDF); DOI: https://doi.org/10.25504/FAIRsharing.wvgta9; Last edited: Jan. 8, 2019, 1:32 p.m.; Last accessed: Jun 26 2019 6:50 p.m.


This record is maintained by klm1

Record added: Jan. 7, 2015, 11:35 a.m.
Record updated: July 11, 2017, 11:35 a.m. by The FAIRsharing Team.

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Support

General

FAQ https://support.hdfgroup.org/HDF5-FAQ.ht ...
support email help@hdfgroup.org
Mailing List None
online documentation https://support.hdfgroup.org/HDF5/Tutor/

Additional Information

Contact Markus W. Covert

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions.

Karr JR,Phillips NC,Covert MW
Database (Oxford) 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
WholeCellSimDB
WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researchers to explore and analyze whole-cell model predictions including predicted: - Metabolite concentrations, - DNA, RNA and protein expression, - DNA-bound protein positions, - DNA modification positions, and - Ribome positions.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is maintained by klm1

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