How to cite this record FAIRsharing.org: ECO; Evidence codes; DOI: https://doi.org/10.25504/FAIRsharing.wvpgwn; Last edited: July 5, 2019, 11:49 a.m.; Last accessed: Jul 21 2019 7:51 p.m.
Record updated: June 21, 2019, 4:52 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.wvpgwn' by 'The FAIRsharing Team' at 09:39, 12 Jun 2019 (approved): 'organizations' has been modified: Before: National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds After: National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds U.S. Department of Energy|http://genomicscience.energy.gov/datasharing/|Funds Added: National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds U.S. Department of Energy|http://genomicscience.energy.gov/datasharing/|Funds Removed: 'grants' has been modified: Before: 1458400 After: 1458400 DE-AC02-05CH11231 R01 GM089636 R01-HG02729- 01 U41-HG002223 U41HG008735 Added: DE-AC02-05CH11231 R01 GM089636 R01-HG02729- 01 U41-HG002223 U41HG008735 Removed: 'supportLinks' has been modified: Before: online documentation|http://obofoundry.github.io/ontology/eco.html After: help|http://www.evidenceontology.org/userguide/ online documentation|http://obofoundry.github.io/ontology/eco.html online documentation|http://www.evidenceontology.org/docs/ Added: help|http://www.evidenceontology.org/userguide/ online documentation|http://www.evidenceontology.org/docs/ Removed: 'related_standards' has been modified: Before: Gene Ontology Ontology for Biomedical Investigations Variation Ontology Ontology of Adverse Events Confidence Information Ontology After: Gene Ontology Ontology for Biomedical Investigations Variation Ontology Ontology of Adverse Events Confidence Information Ontology Disease Ontology Investigation Study Assay Tabular Neural ElectroMagnetic Ontologies Ontology of Microbial Phenotypes Added: Disease Ontology Investigation Study Assay Tabular Neural ElectroMagnetic Ontologies Ontology of Microbial Phenotypes Removed: 'dataProcesses' has been modified: Before: After: browse download submit new term releases Added: browse download submit new term releases Removed:
Edits to 'https://fairsharing.org/FAIRsharing.wvpgwn' by 'The FAIRsharing Team' at 17:01, 11 Jun 2019 (approved): 'related_standards' has been modified: Before: Gene Ontology Ontology for Biomedical Investigations Variation Ontology After: Gene Ontology Ontology for Biomedical Investigations Variation Ontology Ontology of Adverse Events Confidence Information Ontology Added: Ontology of Adverse Events Confidence Information Ontology Removed: 'onto_disciplines' has been modified: Before: Life Sciences After: Computational Biology Life Sciences Ontology and Terminology Added: Computational Biology Ontology and Terminology Removed: 'contactORCID' has been modified: Before: After: 0000-0001-9586-0780 'onto_domains' has been modified: Before: Evidence assay After: Evidence Experiment report Sample annotation Text mining assay literature curation study design Added: Experiment report Sample annotation Text mining literature curation study design Removed: 'publications' has been modified: Before: Standardized description of scientific evidence using the Evidence Ontology (ECO).|Chibucos MC,Mungall CJ,Balakrishnan R,Christie KR,Huntley RP,White O,Blake JA,Lewis SE,Giglio M|Database (Oxford)|2014 After: Standardized description of scientific evidence using the Evidence Ontology (ECO).|Chibucos MC,Mungall CJ,Balakrishnan R,Christie KR,Huntley RP,White O,Blake JA,Lewis SE,Giglio M|Database (Oxford)|2014 An evidence ontology for use in pathway/genome databases.|Karp PD,Paley S,Krieger CJ,Zhang P|Pac Symp Biocomput|2004 ECO, the Evidence & Conclusion Ontology: community standard for evidence information.|Giglio M,Tauber R,Nadendla S,Munro J,Olley D,Ball S,Mitraka E,Schriml LM,Gaudet P,Hobbs ET,Erill I,Siegele DA,Hu JC,Mungall C,Chibucos MC|Nucleic Acids Res|2018 The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.|Chibucos MC,Siegele DA,Hu JC,Giglio M|Methods Mol Biol|2016 Added: An evidence ontology for use in pathway/genome databases.|Karp PD,Paley S,Krieger CJ,Zhang P|Pac Symp Biocomput|2004 ECO, the Evidence & Conclusion Ontology: community standard for evidence information.|Giglio M,Tauber R,Nadendla S,Munro J,Olley D,Ball S,Mitraka E,Schriml LM,Gaudet P,Hobbs ET,Erill I,Siegele DA,Hu JC,Mungall C,Chibucos MC|Nucleic Acids Res|2018 The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.|Chibucos MC,Siegele DA,Hu JC,Giglio M|Methods Mol Biol|2016 Removed:
Edits to 'https://fairsharing.org/FAIRsharing.wvpgwn' by 'The FAIRsharing Team' at 14:17, 18 Jul 2018 (approved): 'homepage' has been modified: Before: http://www.evidenceontology.org/Welcome.html After: http://www.evidenceontology.org/
Edits to 'https://fairsharing.org/FAIRsharing.wvpgwn' by 'The FAIRsharing Team' at 20:00, 09 Sep 2016 (approved): 'homepage' has been modified: Before: http://purl.bioontology.org/ontology/ECO After: http://www.evidenceontology.org/Welcome.html
Edits to 'https://fairsharing.org/FAIRsharing.wvpgwn' by 'The FAIRsharing Team' at 21:23, 08 Sep 2016 (approved): 'description' has been modified: Before: "Evidence codes" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/ECO. This text was generated automatically. If you work on the project responsible for "Evidence codes" then please consider helping us by claiming this record and updating it appropriately. After: Evidence and Conclusions Ontology (ECO) provides the terminology for describing scientific evidence from a variety of biological research types including laboratory studies, literature data mining or computational analysis. ECO uses both 'evidence and assertion' methods in combination to support a research question and whether or not the hypothesis is computer-generated or a research personnel. Domain list has changed: Previous values: Assay|process|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11025 Evidence information|property| Experiment|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2117 New values: Assay|process|http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11025 Evidence information|property| Experiment|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2117 Life Science|domain|
No XSD schemas defined
Conditions of UseApplies to: Data use
|submit new term||http://www.evidenceontology.org/submit_term_request/|
Standardized description of scientific evidence using the Evidence Ontology (ECO).
Chibucos MC,Mungall CJ,Balakrishnan R,Christie KR,Huntley RP,White O,Blake JA,Lewis SE,Giglio M
Database (Oxford) 2014
An evidence ontology for use in pathway/genome databases.
Karp PD,Paley S,Krieger CJ,Zhang P
Pac Symp Biocomput 2004
ECO, the Evidence & Conclusion Ontology: community standard for evidence information.
Giglio M,Tauber R,Nadendla S,Munro J,Olley D,Ball S,Mitraka E,Schriml LM,Gaudet P,Hobbs ET,Erill I,Siegele DA,Hu JC,Mungall C,Chibucos MC
Nucleic Acids Res 2018
No guidelines defined
Models and Formats
No identifier schema standards defined
No metrics standards defined
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Saccharomyces Genome Database
The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. SGD contains a variety of biological information and tools with which to search and analyze it.
The Arabidopsis Information Resource
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Termini-Oriented Protein Function INferred Database
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Bgee DataBase for Gene Expression Evolution
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Gene Ontology Annotation
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Yeast Searching for Transcriptional Regulators and Consensus Tracking
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Rat Genome Database
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Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
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Pseudomonas Genome DB
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EcoCyc E. coli Database
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The Zebrafish Information Network
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Yeast Resource Center Public Data Repository
The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast Saccharomyces cerevisiae.
CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation and data extraction, its relevance to the community, the quality and detail of the stored data and the up-to-date nature of the stored information.
DisGeNET: a knowledge base for disease genomics
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Immune Epitope Database
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National Science Foundation (NSF), USA (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
U.S. Department of Energy (Government body)
1458400 (National Science Foundation (NSF), USA)
DE-AC02-05CH11231 (U.S. Department of Energy)
R01 GM089636 (National Institutes of Health (NIH), Bethesda, MD, USA)
R01-HG02729- 01 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
U41-HG002223 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
U41HG008735 (National Institutes of Health (NIH), Bethesda, MD, USA)