Foundational Model of Anatomy

Abbreviation: FMA

General Information

The Foundational Model of Anatomy Ontology (FMA) is an evolving computer-based knowledge source for biomedical informatics; it is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body in a form that is understandable to humans and is also navigable, parseable and interpretable by machine-based systems. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. Its ontological framework can be applied and extended to all other species

Homepage http://si.washington.edu/projects/fma

Countries that developed this resource United States

Created in 1995

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Feb 27 2020 6:09 p.m.

Record updated: June 25, 2019, 5 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.x56jsy' by 'The FAIRsharing Team' at 17:00, 25 Jun 2019 (approved):

	'organizations' has been modified:
		Before:
			U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
			Structural Informatics Group, University of Washington, Seattle, Washington, USA|http://si.washington.edu/|Maintains
		After:
			U.S. National Library of Medicine|https://www.nlm.nih.gov/|Funds
			Structural Informatics Group, University of Washington, Seattle, Washington, USA|http://si.washington.edu/|Maintains
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
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			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
		Removed:

	'grants' has been modified:
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			LM 03528
			LM 06822
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			DE24417
			LM 03528
			LM 06822
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			DE24417
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	'supportLinks' has been modified:
		Before:
			email|fma@sig.biostr.washington.edu
			mailing list|fma-dev@u.washington.edu
			mailing list|fma-announce@u.washington.edu
			mailing list|fma-content@u.washington.edu
			online documentation|http://si.washington.edu/content/comparisons-other-anatomy-sources
			online documentation|http://si.washington.edu/content/fma-version-update-log
			online documentation|http://si.washington.edu/content/purpose
			online documentation|http://si.washington.edu/projects/fma
			online documentation|https://bitbucket.org/uwsig/fma/issues
			online documentation|http://si.washington.edu/content/summary-fma-resources
		After:
			email|fma@sig.biostr.washington.edu
			mailing list|fma-dev@u.washington.edu
			mailing list|fma-announce@u.washington.edu
			mailing list|fma-content@u.washington.edu
			online documentation|http://si.washington.edu/content/comparisons-other-anatomy-sources
			online documentation|http://si.washington.edu/content/purpose
			online documentation|http://si.washington.edu/projects/fma
			online documentation|https://bitbucket.org/uwsig/fma/issues
			online documentation|http://si.washington.edu/content/summary-fma-resources
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			online documentation|http://si.washington.edu/content/fma-version-update-log

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			Download
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			Download
			FMA Browser
			FMA Update log
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Edits to 'https://fairsharing.org/FAIRsharing.x56jsy' by 'The FAIRsharing Team' at 12:09, 21 Nov 2018 (approved):

	'domains' has been modified:
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			Anatomy
			Biomedical Science
			Phenotype
			Radiology
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			Anatomy
			Biomedical Science
			Neuroimaging
			Phenotype
			Radiology
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			Neuroimaging
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Edits to 'https://fairsharing.org/FAIRsharing.x56jsy' by 'The FAIRsharing Team' at 10:26, 29 Jan 2018 (approved):

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			Download
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Edits to 'https://fairsharing.org/FAIRsharing.x56jsy' by 'The FAIRsharing Team' at 10:22, 29 Jan 2018 (approved):

	'homepage' has been modified:
		Before: http://bioportal.bioontology.org/ontologies/FMA
		After: http://si.washington.edu/projects/fma

Edits to 'https://fairsharing.org/FAIRsharing.x56jsy' by 'The FAIRsharing Team' at 10:24, 07 Oct 2016 (approved):

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Support

General

support email	fma@sig.biostr.washington.edu
Mailing List	FMA Content
Mailing List	FMA Developers
Mailing List	FMA Announcements
online documentation	http://si.washington.edu/projects/fma
online documentation	Issue Tracker
online documentation	Summary of Resources
online documentation	Comparison with other anatomy sources
online documentation	Purpose of the FMA

Additional Information

Contact

Onard Mejino

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/FMA
OBO	http://obofoundry.org/ontology/fma.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 3.0 Unported (CC BY 3.0)

Data Versioning

FMA Update log

http://si.washington.edu/content/fma-version-update-log

Data Access

Download	http://sig.biostr.washington.edu/share/downloads/fma/release/latest/fm ...
FMA Browser	http://purl.org/sig/fma/browser

Publications

A reference ontology for biomedical informatics: the Foundational Model of Anatomy.

Rosse C,Mejino JL Jr
J Biomed Inform 2004

View Paper (PubMed) View Publication

From frames to OWL2: Converting the Foundational Model of Anatomy.

Detwiler LT,Mejino JLV,Brinkley JF
Artif Intell Med 2016

View Paper (PubMed) View Publication

FMA Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (4)

Stem Cell Discovery Engine
Comparison system for cancer stem cell analysis

CellFinder
CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.

The Cardiovascular Research Grid
The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovascular data and data analysis tools. CVRG tools are developed using the Software as a Service model, allowing users to access tools through their browser, thus eliminating the need to install and maintain complex software.

SICAS medical image repository
The Sicas Medical Image Repository is a centralized storage system where the data such as Images, Segmentations, SSM can be used to build and shared statistical shape models. Dicom, ITK based images and statistical models in the statismo format can be stored on SMIR.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

U.S. National Library of Medicine (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

Structural Informatics Group, University of Washington, Seattle, Washington, USA (University)

Grant Number(s)

DE24417 (National Institutes of Health (NIH), Bethesda, MD, USA)
LM 03528 (U.S. National Library of Medicine)
LM 06822 (U.S. National Library of Medicine)

Foundational Model of Anatomy

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