databases > DOI:10.25504/FAIRsharing.x6d6sx

ready Bgee DataBase for Gene Expression Evolution


General Information
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

How to cite this record Bgee; Bgee DataBase for Gene Expression Evolution; DOI:; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 23 2019 9:41 a.m.

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Record updated: Aug. 20, 2016, 9:42 p.m. by The FAIRsharing Team.



Access / Retrieve Data


Uncovering hidden duplicated content in public transcriptomics data.

Rosikiewicz M., Comte A., Niknejad A., Robinson-Rechavi M., Bastian FB.,
Database (Oxford) 2013

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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA,Balhoff JP,Bastian FB,Blackburn DC,Blake JA,Bradford Y,Comte A,Dahdul WM,Dececchi TA,Druzinsky RE,Hayamizu TF,Ibrahim N,Lewis SE,Mabee PM,Niknejad A,Robinson-Rechavi M,Sereno PC,Mungall CJ
J Biomed Semantics 2014

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vHOG, a multispecies vertebrate ontology of homologous organs groups.

Niknejad A,Comte A,Parmentier G,Roux J,Bastian FB,Robinson-Rechavi M
Bioinformatics 2012

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Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species

Frederic Bastian, Gilles Parmentier, Julien Roux, Sebastien Moretti, Vincent Laudet, Marc Robinson-Rechavi
Lecture Notes in Computer Science 2008

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