bigWig Track Format
Countries that developed this resource United States
How to cite this record FAIRsharing.org: bigWig Track Format; bigWig Track Format; DOI: https://doi.org/10.25504/FAIRsharing.x9k6a1; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Oct 20 2020 9:41 p.m.
Record updated: July 11, 2017, 1:45 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.x9k6a1' by 'The FAIRsharing Team' at 13:45, 11 Jul 2017 (approved): 'name' has been modified: Before: big Wig Format After: bigWig Track Format
Edits to 'https://fairsharing.org/FAIRsharing.x9k6a1' by 'The FAIRsharing Team' at 13:42, 11 Jul 2017 (approved): 'name' has been modified: Before: big Wiggle Format After: big Wig Format
Edits to 'https://fairsharing.org/FAIRsharing.x9k6a1' by 'The FAIRsharing Team' at 21:06, 17 Oct 2016 (approved): 'contactName' has been modified: Before: After: UCSC staff Added: Removed:
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Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) to the end of the first 5 year phase of whole-genome data production in 2012. All data produced by ENCODE investigators and the results of ENCODE analysis projects from this period are hosted in the UCSC Genome browser and database.
UCSC Genome Browser database
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic datasets.
The UCSC Archaeal Genome Browser
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. ENCODE results from 2007 and later are available from this project. This covers data generated during the two production phases 2007-2012 and 2013-present.
4DNucleome Data Portal
The 4D Nucleome Data Portal (4DN) hosts data generated by the 4DN Network and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization. It is a platform to search, visualize, and download nucleomics data.
NucMap is a database of genome-wide nucleosome positioning across multiple species. Based on raw sequence data from published studies, NucMap integrates, analyzes, and visualizes nucleosome positioning data across species.
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