Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 18:44, 16 Apr 2021 (not approved):
'publications' has been modified:
Before:
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.|Subramanian SL, Kitchen RR, Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A|Journal of Extracellular Vesicles|2015
The NIH Extracellular RNA Communication Consortium.|Ainsztein AM, Brooks PJ, Dugan VG, Ganguly A, Guo M, Howcroft TK, Kelley CA, Kuo LS, Labosky PA, Lenzi R, McKie GA, Mohla S, Procaccini D, Reilly M, Satterlee JS, Srinivas PR, Church ES, Sutherland M, Tagle DA, Tucker JM, Venkatachalam S|Journal of Extracellular Vesicles|2015
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.|Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A|Cell|2019
After:
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.|Subramanian SL, Kitchen RR, Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A|Journal of Extracellular Vesicles|2015
The NIH Extracellular RNA Communication Consortium.|Ainsztein AM, Brooks PJ, Dugan VG, Ganguly A, Guo M, Howcroft TK, Kelley CA, Kuo LS, Labosky PA, Lenzi R, McKie GA, Mohla S, Procaccini D, Reilly M, Satterlee JS, Srinivas PR, Church ES, Sutherland M, Tagle DA, Tucker JM, Venkatachalam S|Journal of Extracellular Vesicles|2015
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.|Murillo OD. et al.|Cell|2019
Added:
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.|Murillo OD. et al.|Cell|2019
Removed:
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.|Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A|Cell|2019
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 21:25, 22 Apr 2019 (approved):
'related_databases' has been modified:
Before:
After:
Gene Expression Omnibus
Database of Genotypes and Phenotypes
Added:
Gene Expression Omnibus
Database of Genotypes and Phenotypes
Removed:
'standardsImplemented' has been modified:
Before:
After:
JavaScript Object Notation for Linking Data
Added:
JavaScript Object Notation for Linking Data
Removed:
'accessPoints' has been modified:
Before:
After:
REST|https://exrna-atlas.docs.stoplight.io/|exRNA Atlas JSON-LD API
Added:
REST|https://exrna-atlas.docs.stoplight.io/|exRNA Atlas JSON-LD API
Removed:
'tools' has been modified:
Before:
extra-cellular RNA processing toolkit (exceRpt)|4.6.2|https://rkitchen.github.io/exceRpt/
After:
extra-cellular RNA processing toolkit (exceRpt)|4.6.2|https://gersteinlab.github.io/exceRpt/
XDec (Expression Deconvolution)|1.0.2|https://github.com/BRL-BCM/XDec
Added:
extra-cellular RNA processing toolkit (exceRpt)|4.6.2|https://gersteinlab.github.io/exceRpt/
XDec (Expression Deconvolution)|1.0.2|https://github.com/BRL-BCM/XDec
Removed:
extra-cellular RNA processing toolkit (exceRpt)|4.6.2|https://rkitchen.github.io/exceRpt/
'publications' has been modified:
Before:
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.|Subramanian SL, Kitchen , Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A|Journal of Extracellular Vesicles|2015
The NIH Extracellular RNA Communication Consortium.|Ainsztein AM, Brooks PJ, Dugan VG, Ganguly A, Guo M, Howcroft TK, Kelley CA, Kuo LS, Labosky PA, Lenzi R, McKie GA, Mohla S, Procaccini D, Reilly M, Satterlee JS, Srinivas PR, Church ES, Sutherland M, Tagle DA, Tucker JM, Venkatachalam S|Journal of Extracellular Vesicles|2015
After:
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.|Subramanian SL, Kitchen RR, Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A|Journal of Extracellular Vesicles|2015
The NIH Extracellular RNA Communication Consortium.|Ainsztein AM, Brooks PJ, Dugan VG, Ganguly A, Guo M, Howcroft TK, Kelley CA, Kuo LS, Labosky PA, Lenzi R, McKie GA, Mohla S, Procaccini D, Reilly M, Satterlee JS, Srinivas PR, Church ES, Sutherland M, Tagle DA, Tucker JM, Venkatachalam S|Journal of Extracellular Vesicles|2015
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.|Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A|Cell|2019
Added:
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.|Subramanian SL, Kitchen RR, Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A|Journal of Extracellular Vesicles|2015
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.|Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A|Cell|2019
Removed:
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.|Subramanian SL, Kitchen , Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A|Journal of Extracellular Vesicles|2015
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 13:58, 15 Oct 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas (https://exrna-atlas.org) is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas is the data and metadata repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline. ERCC-developed quality metrics are uniformly applied to the datasets. The exRNA Atlas accepts submissions for RNA-seq or qPCR data.
'dataProcesses' has been modified:
Before:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
Data Submission
After:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
Data Submission
exRNA Atlas Quality Control Metrics
Added:
exRNA Atlas Quality Control Metrics
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 10:20, 17 Sep 2018 (approved):
'supportLinks' has been modified:
Before:
email|thistlew@bcm.edu
online documentation|http://genboree.org/theCommons/projects/exrna-mads/wiki/exRNA%20Atlas
After:
email|thistlew@bcm.edu
online documentation|http://genboree.org/theCommons/projects/exrna-mads/wiki/exRNA%20Atlas
online documentation|https://exrna.org/resources/data/data-quality-control-standards/
Added:
online documentation|https://exrna.org/resources/data/data-quality-control-standards/
Removed:
'dataProcesses' has been modified:
Before:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
After:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
Data Submission
Added:
Data Submission
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 06:14, 16 Sep 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas (https://exrna-atlas.org) is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 03:19, 15 Sep 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived <b>exRNA</b> profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 03:19, 15 Sep 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived <b>exRNA</b> profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 20:44, 11 Sep 2018 (approved):
'domains' has been modified:
Before:
Data visualization
Differential gene expression analysis
Pathway model
RNA sequencing (RNA-Seq)
qPCR
After:
Data visualization
Differential gene expression analysis
Life Science
Pathway model
RNA sequencing (RNA-Seq)
Real time polymerase chain reaction (RT-PCR)
qPCR
Added:
Life Science
Real time polymerase chain reaction (RT-PCR)
Removed:
'licences' has been modified:
Before:
Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
After:
exRNA Atlas Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
Added:
exRNA Atlas Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
Removed:
Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data