How to cite this record
FAIRsharing.org: exRNA Atlas; Extracellular RNA Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xcvp6a;
Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Mar 26 2019 2:27 p.m.
Publication for citation
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.
Subramanian SL, Kitchen , Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A; Journal of Extracellular Vesicles ;
2015;
10.3402/jev.v4.27497;
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 13:58, 15 Oct 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas (https://exrna-atlas.org) is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas is the data and metadata repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline. ERCC-developed quality metrics are uniformly applied to the datasets. The exRNA Atlas accepts submissions for RNA-seq or qPCR data.
'dataProcesses' has been modified:
Before:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
Data Submission
After:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
Data Submission
exRNA Atlas Quality Control Metrics
Added:
exRNA Atlas Quality Control Metrics
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 10:20, 17 Sep 2018 (approved):
'supportLinks' has been modified:
Before:
email|thistlew@bcm.edu
online documentation|http://genboree.org/theCommons/projects/exrna-mads/wiki/exRNA%20Atlas
After:
email|thistlew@bcm.edu
online documentation|http://genboree.org/theCommons/projects/exrna-mads/wiki/exRNA%20Atlas
online documentation|https://exrna.org/resources/data/data-quality-control-standards/
Added:
online documentation|https://exrna.org/resources/data/data-quality-control-standards/
Removed:
'dataProcesses' has been modified:
Before:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
After:
Web Interface
Automated Pipeline
Manual Curation
Manual Release
Version History
Data Submission
Added:
Data Submission
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 06:14, 16 Sep 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas (https://exrna-atlas.org) is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 03:19, 15 Sep 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived <b>exRNA</b> profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'thistlew' at 03:19, 15 Sep 2018 (approved):
'description' has been modified:
Before: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
After: The exRNA Atlas is the (meta)data repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different contexts. The exRNA Atlas includes small RNA sequencing and qPCR-derived <b>exRNA</b> profiles from human and mouse biofluids. All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline (https://rkitchen.github.io/exceRpt/) and ERCC-developed quality metrics (https://exrna.org/resources/data/data-quality-control-standards/) are uniformly applied to these datasets. If you're interested in submitting your RNA-seq or qPCR data to the Atlas, view our Submission Guide (http://genboree.org/theCommons/projects/exrna-mads/wiki/Data%20Submission%20to%20DCC%20using%20FTP).
Edits to 'https://fairsharing.org/FAIRsharing.xcvp6a' by 'The FAIRsharing Team' at 20:44, 11 Sep 2018 (approved):
'domains' has been modified:
Before:
Data visualization
Differential gene expression analysis
Pathway model
RNA sequencing (RNA-Seq)
qPCR
After:
Data visualization
Differential gene expression analysis
Life Science
Pathway model
RNA sequencing (RNA-Seq)
Real time polymerase chain reaction (RT-PCR)
qPCR
Added:
Life Science
Real time polymerase chain reaction (RT-PCR)
Removed:
'licences' has been modified:
Before:
Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
After:
exRNA Atlas Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
Added:
exRNA Atlas Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
Removed:
Data Access Policy|https://exrna.org/resources/data/data-access-policy-summary/|Data
Extracellular RNA Atlas
