Fungal and Oomycete genomics resource
How to cite this record FAIRsharing.org: FungiDB; Fungal and Oomycete genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.xf30yc; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Nov 19 2018 10:18 p.m.
Record updated: Dec. 6, 2017, 1:23 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.xf30yc' by 'The FAIRsharing Team' at 13:56, 02 Sep 2016 (approved): 'name' has been modified: Before: FungiDB: an integrated functional genomics database for fungi After: Fungal and Oomycete genomics resource
Edits to 'https://fairsharing.org/FAIRsharing.xf30yc' by 'The FAIRsharing Team' at 17:55, 01 Sep 2016 (approved): 'description' has been modified: Before: Functional genomics of fungi After: FungiDB is an integrated genomic and functional genomic database for the kingdom Fungi. The database integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining. Tools have changed: Previous values: New values: blast Companion EuPaGDT Support links have changed: Previous values: http://fungidb.org/fungidb/contact.do New values: http://fungidb.org/fungidb/contact.do @fungidb https://www.youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1 http://fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.Tutorials http://workshop.eupathdb.org/current/index.php?page=schedule http://fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.Glossary https://www.genome.gov/glossary/ Access points have changed: Previous values: New values: REST:http://fungidb.org/fungidb/serviceList.jsp Data processes have changed: Previous values: web interface file download(txt) SQL database dump biannual release or quarterly release (projected release plan) crowd-sourcing curation community curation no versioning policy access to historical files available New values: web interface file download(txt) SQL database dump biannual release or quarterly release (projected release plan) crowd-sourcing curation community curation no versioning policy access to historical files available search download Genome browser Related databases have changed: Previous values: New values: biodbcore-000344: Eukaryotic Pathogen Database Resources Grants have changed: Previous values: New values: R03 AI105636-02 2011-68004-30104
Edits to 'https://fairsharing.org/FAIRsharing.xf30yc' by 'The FAIRsharing Team' at 15:51, 01 Sep 2016 (approved): 'contactName' has been modified: Before: After: Jason E. Stajich Added: Removed:
|online documentation||http://fungidb.org/fungidb/showXmlDataCo ...|
|Contact||Jason E. Stajich ORCID|
Conditions of Use
|web interface||No link recorded|
|file download(txt)||No link recorded|
|SQL database dump||No link recorded|
|biannual release or quarterly release (projected release plan)||No link recorded|
|community curation||No link recorded|
|no versioning policy||No link recorded|
|access to historical files available||No link recorded|
|download||No link recorded|
|search||No link recorded|
|crowd-sourcing curation||No link recorded|
REST Web Services
|REST Web Services||http://fungidb.org/fungidb/serviceList.jsp|
FungiDB: an integrated functional genomics database for fungi.
Stajich JE,Harris T,Brunk BP,Brestelli J,Fischer S,Harb OS,Kissinger JC,Li W,Nayak V,Pinney DF,Stoeckert CJ Jr,Roos DS
Nucleic Acids Res 2011
Literature-based gene curation and proposed genetic nomenclature for cryptococcus.
Inglis DO,Skrzypek MS,Liaw E,Moktali V,Sherlock G,Stajich JE
Eukaryot Cell 2014
No guidelines defined
Models and Formats
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National Institutes of Health (Government body)
US Department of Health and Human Services (Government body)
2011-68004-30104 (National Institute of Food and Agriculture (NIFA), US Department of Agriculture (USDA), USA)
R03 AI105636-02 (National Institutes of Health)