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Metabolomics Workbench

Abbreviation:MW

Recommended

General Information

The Metabolomics Workbench serves as a national and international repository for metabolomics data and metadata and provides analysis tools and access to metabolite standards, protocols, tutorials, training, and more.

Homepage https://www.metabolomicsworkbench.org/

Countries that developed this resource United States

Created in 2012

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Data sharing

In the following recommendations:

How to cite this record FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Oct 17 2021 2:53 p.m.

Publication for citation Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Sud M,Fahy E,Cotter D,Azam K,Vadivelu I,Burant C,Edison A,Fiehn O,Higashi R,Nair KS,Sumner S,Subramaniam S; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1042;

This record is maintained by eoinfahy

Record added: May 8, 2015, 3:04 p.m.
Record updated: March 16, 2021, 12:53 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.xfrgsf' by 'The FAIRsharing Team' at 12:53, 16 Mar 2021 (approved):

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.metabolomicsworkbench.org/data/faq.php
			contact form|http://www.metabolomicsworkbench.org/about/contact.php
			online documentation|http://www.metabolomicsworkbench.org/data/tutorials.php
		After:
			FAQ|https://www.metabolomicsworkbench.org/data/faq.php
			contact form|http://www.metabolomicsworkbench.org/about/contact.php
			email|shankar@ucsd.edu
			help|https://www.metabolomicsworkbench.org/data/tutorials.php
			twitter|@MetabolomicsWB
		Added:
			FAQ|https://www.metabolomicsworkbench.org/data/faq.php
			email|shankar@ucsd.edu
			help|https://www.metabolomicsworkbench.org/data/tutorials.php
			twitter|@MetabolomicsWB
		Removed:
			FAQ|http://www.metabolomicsworkbench.org/data/faq.php
			online documentation|http://www.metabolomicsworkbench.org/data/tutorials.php

	'description' has been modified:
		Before: Experimental data generated by NIH Metabolomics Regional Comprehensive Metabolomics Resource Cores (RCMRC)s * and other NIH-sponsored projects is available for searching and analysis, via online interfaces. Users may also search the Metabolomics Workbench Metabolite Database, which now contains over 60,000 entries.
		After: The Metabolomics Workbench serves as a national and international repository for metabolomics data and metadata and provides analysis tools and access to metabolite standards, protocols, tutorials, training, and more. 

	'licences' has been modified:
		Before:
		After:
			Metabolomics Workbench Terms of Use|http://www.metabolomicsworkbench.org/about/termsofuse.php|Data
			NIH Common Fund Metabolomics Data Sharing Plan|https://www.metabolomicsworkbench.org/data/datasharing.php|Data
		Added:
			Metabolomics Workbench Terms of Use|http://www.metabolomicsworkbench.org/about/termsofuse.php|Data
			NIH Common Fund Metabolomics Data Sharing Plan|https://www.metabolomicsworkbench.org/data/datasharing.php|Data
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Life Science
			Metabolomics
		After:
			Metabolomics
		Added:
		Removed:
			Life Science

	'onto_domains' has been modified:
		Before:
		After:
			metabolite
			protocol
		Added:
			metabolite
			protocol
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
			Browse, data access, http://www.metabolomicsworkbench.org/data/browse.php
			Search, data access, http://www.metabolomicsworkbench.org/data/browse.php
			Analyze, data access, http://www.metabolomicsworkbench.org/data/analyze.php
			Upload, data access, http://www.metabolomicsworkbench.org/data/DRCCDataDeposit.php
			Search, data access, http://www.metabolomicsworkbench.org/data/mb_mass_form.php
		After:
			Browse, data access, http://www.metabolomicsworkbench.org/data/browse.php
			Search, data access, http://www.metabolomicsworkbench.org/data/browse.php
			Analyze Studies, data access, https://www.metabolomicsworkbench.org/data/analyze.php
			Upload, data curation, https://www.metabolomicsworkbench.org/data/DRCCDataDeposit.php
			Browse & Search, data access, https://www.metabolomicsworkbench.org/data/browse.php
		Added:
			Analyze Studies, data access, https://www.metabolomicsworkbench.org/data/analyze.php
			Upload, data curation, https://www.metabolomicsworkbench.org/data/DRCCDataDeposit.php
			Browse & Search, data access, https://www.metabolomicsworkbench.org/data/browse.php
		Removed:
			Analyze, data access, http://www.metabolomicsworkbench.org/data/analyze.php
			Upload, data access, http://www.metabolomicsworkbench.org/data/DRCCDataDeposit.php
			Search, data access, http://www.metabolomicsworkbench.org/data/mb_mass_form.php

	'accessPoints' has been modified:
		Before:
		After:
			REST|https://www.metabolomicsworkbench.org/tools/mw_rest.php|MW REST API
		Added:
			REST|https://www.metabolomicsworkbench.org/tools/mw_rest.php|MW REST API
		Removed:

	'homepage' has been modified:
		Before: http://www.metabolomicsworkbench.org
		After: https://www.metabolomicsworkbench.org/

In Collections

NIH-supported data repositories

Metabolomics Standards and Databases

H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project

Open Science Prize

Support

General

FAQ	FAQ
contact form	Contact Form
support email	Dr. Shankar Subramaniam
help	Tutorials
twitter	@MetabolomicsWB

Additional Information

Contact

Eoin Fahy

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Upload

https://www.metabolomicsworkbench.org/data/DRCCDataDeposit.php

Data Access

Browse	http://www.metabolomicsworkbench.org/data/browse.php
Search	http://www.metabolomicsworkbench.org/data/browse.php
Analyze Studies	https://www.metabolomicsworkbench.org/data/analyze.php
Browse & Search	https://www.metabolomicsworkbench.org/data/browse.php

REST Web Services

MW REST API

https://www.metabolomicsworkbench.org/tools/mw_rest.php

Publications

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.

Sud M,Fahy E,Cotter D,Azam K,Vadivelu I,Burant C,Edison A,Fiehn O,Higashi R,Nair KS,Sumner S,Subramaniam S
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Reference list of Metabolite names

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by eoinfahy

Funds

U.S. National Library of Medicine (Government body)

Grant Number(s)

NIH Common Fund Metabolomics Program (U.S. National Library of Medicine)

Metabolomics Workbench

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