standards > terminology artifact > DOI:10.25504/FAIRsharing.xm7tkj


ready Nuclear Magnetic Resonance Controlled Vocabulary

Abbreviation: nmrCV


General Information
nmrCV is a MSI-sanctioned NMR controlled vocabulary, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with standardized meaningful data descriptors. This CV is the successor of the (now deprecated) 'NMR-instrument specific component of metabolomics investigations' CV of 2006. This standard is currently financed via the PhenoMeNal EU project. It is a simple taxonomy build according to the same design principles as its role model artefact, the Mass Spec CV of PSI.

Homepage http://www.nmrML.org

Countries that developed this resource Canada , European Union , France , United Kingdom

Created in 2015




How to cite this record FAIRsharing.org: nmrCV; Nuclear Magnetic Resonance Controlled Vocabulary; DOI: https://doi.org/10.25504/FAIRsharing.xm7tkj; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: Jun 26 2019 4:59 p.m.


This record is maintained by DanielSchober  ORCID

Record updated: Jan. 24, 2018, 1:03 p.m. by DanielSchober.

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In Collections
Metabolomics Standards and Databases
OBO Foundry
H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
Chemistry



Tools
Parsers and visualisers http://nmrml.org/tools/

Schemas

https://github.com/nmrML/nmrML/tree/master/xml-schemata

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

The metabolomics standards initiative.

MSI Board Members, Sansone SA, Fan T, Goodacre R, Griffin JL, Hardy NW, Kaddurah-Daouk R, Kristal BS, Lindon J, Mendes P, Morrison N, Nikolau B, Robertson D, Sumner LW, Taylor C, van der Werf M, van Ommen B, Fiehn O.
Nat. Biotechnol. 2007

View Paper (PubMed) View Publication

nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.

Schober D1, Jacob D2, Wilson M3, Cruz JA3, Marcu A3, Grant JR3, Moing A2, Deborde C2, de Figueiredo LF4, Haug K4, Rocca-Serra P5, Easton J6, Ebbels TMD7, Hao J7, Ludwig C8, Günther UL9, Rosato A10, Klein MS11, Lewis IA11, Luchinat C10, Jones AR12, Grauslys A12, Larralde M13, Yokochi M14, Kobayashi N14, Porzel A15, Griffin JL16, Viant MR17, Wishart DS3, Steinbeck C4, Salek RM4, Neumann S1
Anal. Chem. 2017

View Paper (PubMed) View Publication

NMR Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.


Related Standards

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (4)
MetaboLights
MetaboLights is a database is a collection of metabolite structures. This resource provides information on the compound origins,the biological roles, locations and concentrations, as well as experimental data from metabolic experiments. The tools and capabilities of this database is firmly routed in collaborative working worldwie with the metabolomics community such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).
The Human Metabolome Database
The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.
Biological Magnetic Resonance Databank
BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.


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Funds

Maintains

Undefined

Grant Number(s)