standards > terminology artifact > DOI:10.25504/FAIRsharing.xx2wv5


ready Pharmacogenomics Ontology

Abbreviation: PharmGKB-owl


General Information
The PharmGKB Ontology imports genetic sequence data, collected in relational format, into the OWL, and aims to automate the process of updating the links between the ontology and data acquisition when the ontology changes. They have linked PharmGKB with data acquisition from a relational model of genetic sequence information.

Homepage https://code.google.com/p/pharmgkb-owl/

Countries that developed this resource United States

Created in 2010

Taxonomic range




How to cite this record FAIRsharing.org: PharmGKB-owl; Pharmacogenomics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.xx2wv5; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Feb 27 2020 5:40 p.m.


This record is maintained by PharmGKB  (pharmgkb)

Record updated: Nov. 9, 2016, 1:14 p.m. by The FAIRsharing Team.

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Support

General

support email feedback@pharmgkb.org

Additional Information

Contact Teri E. Klein

External Links

Bioportal http://bioportal.bioontology.org/ontologies/PHARMGKB

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use


Data Access

download https://code.google.com/archive/p/pharmgkb-owl/downloads



Publications

PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base.

Thorn CF,Klein TE,Altman RB
Methods Mol Biol 2005

View Paper (PubMed) View Publication

PHARMGKB Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
Pharmacogenomics Knowledge Base
PharmGKB curates primary genotype and phenotype data, annotates gene variants and gene-drug-disease relationships via literature review, and summarizes important PGx genes and drug pathways. PharmGKB collects, curates and disseminates knowledge about the impact of human genetic variation on drug responses.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Maintains